SMTL ID : 4b7s.2 (1 other biounit)

PikC D50N mutant bound to the 10-DML analog with the 3-(N,N- dimethylamino)propanoate anchoring group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: K.92, M.112, L.113, H.120, R.124, F.131, L.260, A.263, G.264, T.267, T.268, L.271, P.309, V.310, A.313, T.314, R.316, A.366, F.367, G.368, I.371, H.372, C.374, I.375, G.376, A.380 Ligands: QLE.3 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:L.113, A:F.131, A:L.271, A:P.309, A:V.310, A:F.367, A:F.367, A:I.375, A:A.380 Hydrogen bonds: A:T.314 Water bridges: A:H.372 Salt bridges: A:K.92, A:H.120, A:R.124, A:R.316, A:H.372 Metal complexes: A:C.374

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: T.132, R.134 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.134 Salt bridges: A:R.134 SO4.4: 5 residues within 4Å: Chain A: H.282, P.283, D.284, Q.285, R.354 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.284, A:Q.285, A:Q.285, A:R.354

1 x QLE: [(3R,4S,5S,7R,9E,11R,12R)-12-ethyl-3,5,7,11-tetramethyl-2,8-bis(oxidanylidene)-1-oxacyclododec-9-en-4-yl] 3-(dimethylamino)propanoate(Non-covalent)

QLE.3: 19 residues within 4Å: Chain A: W.94, E.105, N.109, L.113, E.114, F.198, V.199, H.258, I.259, V.262, A.263, E.266, T.267, V.310, T.314, M.414, I.415 Ligands: HEM.1, GOL.5 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.198, A:V.199, A:I.259, A:A.263, A:T.267, A:V.310, A:I.415, A:I.415 Salt bridges: A:E.114, A:H.258

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: W.94, T.314, Y.315, M.414 Ligands: QLE.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Negretti, S. et al., Directing Group-Controlled Regioselectivity in an Enzymatic C-H Bond Oxygenation. J.Am.Chem.Soc. (2014)

Release Date

2013-08-28

Peptides

CYTOCHROME P450 HYDROXYLASE PIKC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CYTOCHROME P450 HYDROXYLASE PIKC

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