SMTL ID : 2w0d.4 (3 other biounits)

Does a Fast Nuclear Magnetic Resonance Spectroscopy- and X-Ray Crystallography Hybrid Approach Provide Reliable Structural Information of Ligand-Protein Complexes? A Case Study of Metalloproteinases.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.114, H.118, H.124 Ligands: CGS.10 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.118, A:H.124 ZN.2: 5 residues within 4Å: Chain A: H.64, D.66, H.68, H.79, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.71, G.72, G.74, I.76, D.94, E.97 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.71, A:G.72, A:G.74, A:I.76, A:D.94, A:E.97 CA.4: 3 residues within 4Å: Chain A: D.20, E.95, E.97 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.20, A:E.95, A:E.95, H2O.5, H2O.5 CA.5: 6 residues within 4Å: Chain A: A.53, D.54, G.86, I.87, G.88, D.90 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.54, A:G.86, A:G.88, A:D.90, H2O.3, H2O.4

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 4 residues within 4Å: Chain A: T.100, H.102, S.103, G.104 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 5 residues within 4Å: Chain A: A.130, V.131, F.133, T.135 Ligands: CGS.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.131

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 6 residues within 4Å: Chain A: A.63, H.64, G.65, D.66, F.67, H.68 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.67 Hydrogen bonds: A:H.64, A:G.65, A:F.67, A:H.68 Water bridges: A:D.66, A:D.66, A:F.67, A:A.69 ACT.9: 2 residues within 4Å: Chain A: R.6, K.7 No protein-ligand interaction detected (PLIP)

1 x CGS: N-HYDROXY-2(R)-[[(4-METHOXYPHENYL)SULFONYL](3-PICOLYL)AMINO]-3-METHYLBUTANAMIDE HYDROCHLORIDE(Non-covalent)

CGS.10: 14 residues within 4Å: Chain A: G.75, I.76, L.77, A.78, L.110, T.111, H.114, H.118, H.124, P.134, T.135, Y.136 Ligands: ZN.1, NA.7 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.76, A:T.111, A:Y.136 Hydrogen bonds: A:A.78, A:A.78 Water bridges: A:Y.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isaksson, J. et al., Does a Fast Nuclear Magnetic Resonance Spectroscopy- and X-Ray Crystallography Hybrid Approach Provide Reliable Structural Information of Ligand-Protein Complexes? a Case Study of Metalloproteinases. J.Med.Chem. (2009)

Release Date

2009-03-03

Peptides

MACROPHAGE METALLOELASTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

MACROPHAGE METALLOELASTASE

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