SMTL ID : 3uvc.2 (1 other biounit)

MMP12 in a complex with the dimeric adduct: 5-(5-phenylhydantoin)-5-phenylhydantoin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: H.124 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: N.16, Y.17, R.23 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: W.5, R.6 Ligand excluded by PLIP

3 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.114, H.118, H.124 Ligands: IMD.11 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.118, A:H.124 ZN.4: 4 residues within 4Å: Chain A: H.64, D.66, H.79, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92 ZN.8: 2 residues within 4Å: Chain A: H.68 Ligands: IMD.9 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.68, H2O.2

3 x CA: CALCIUM ION(Non-covalent)

CA.5: 3 residues within 4Å: Chain A: D.20, E.95, E.97 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.20, A:E.95, A:E.95, H2O.1, H2O.1 CA.6: 5 residues within 4Å: Chain A: D.54, G.86, I.87, G.88, D.90 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.54, A:G.86, A:G.88, A:D.90, H2O.1, H2O.1 CA.7: 6 residues within 4Å: Chain A: D.71, G.72, G.74, I.76, D.94, E.97 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.71, A:G.72, A:G.74, A:I.76, A:D.94, A:E.97

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.9: 6 residues within 4Å: Chain A: D.66, F.67, H.68, F.81, I.87 Ligands: ZN.8 No protein-ligand interaction detected (PLIP) IMD.11: 6 residues within 4Å: Chain A: A.78, H.114, H.118, H.124 Ligands: ZN.3, EDO.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.78 Water bridges: A:A.78

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.12: 4 residues within 4Å: Chain A: H.114, P.134, Y.136 Ligands: IMD.11 4 PLIP interactions: 4 interactions with chain A Water bridges: A:A.78, A:V.131, A:F.133, A:T.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nordstrom, H. et al., Characterization of fragments interacting with MMP-12. To be Published

Release Date

2013-01-02

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Macrophage metalloelastase

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