SMTL ID : 3uvc.1 (1 other biounit)

MMP12 in a complex with the dimeric adduct: 5-(5-phenylhydantoin)-5-phenylhydantoin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.114, H.118, H.124 Ligands: 0D2.14 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.118, A:H.124 ZN.2: 4 residues within 4Å: Chain A: H.64, D.66, H.79, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92 ZN.6: 2 residues within 4Å: Chain A: H.68 Ligands: IMD.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.68

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: D.20, E.95, E.97 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.20, A:E.95, A:E.95, H2O.1, H2O.2 CA.4: 5 residues within 4Å: Chain A: D.54, G.86, I.87, G.88, D.90 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.54, A:G.86, A:G.88, A:D.90, H2O.1, H2O.2 CA.5: 6 residues within 4Å: Chain A: D.71, G.72, G.74, I.76, D.94, E.97 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.71, A:G.72, A:G.74, A:I.76, A:D.94, A:E.97 CA.9: 2 residues within 4Å: Chain A: S.38, T.41 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.38, A:T.41, H2O.1, H2O.2, H2O.2

3 x IMD: IMIDAZOLE(Non-covalent)

IMD.7: 4 residues within 4Å: Chain A: H.68, H.79 Ligands: ZN.6, 0D2.14 3 PLIP interactions: 3 interactions with chain A Water bridges: A:A.80, A:A.80, A:A.80 IMD.8: 4 residues within 4Å: Chain A: G.65, D.66, F.67 Ligands: IMD.13 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:F.67 IMD.13: 2 residues within 4Å: Chain A: G.65 Ligands: IMD.8 No protein-ligand interaction detected (PLIP)

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 3 residues within 4Å: Chain A: N.16, Y.17, R.23 Ligand excluded by PLIP CL.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain A: R.31, S.46, K.47 Ligand excluded by PLIP

1 x 0D2: (4R,4'S)-4,4'-diphenyl-4,4'-biimidazolidine-2,2',5,5'-tetrone(Non-covalent)

0D2.14: 14 residues within 4Å: Chain A: G.75, I.76, L.77, A.78, H.79, T.111, H.114, H.118, H.124, P.134, T.135, Y.136 Ligands: ZN.1, IMD.7 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.76, A:I.76, A:T.111, A:H.114 Hydrogen bonds: A:G.75, A:L.77, A:A.78, A:A.78, A:P.134 Water bridges: A:Y.136, A:Y.136 pi-Stacking: A:H.114

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.15: 4 residues within 4Å: Chain A: L.110, T.135, Y.136, K.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.135, A:K.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nordstrom, H. et al., Characterization of fragments interacting with MMP-12. To be Published

Release Date

2013-01-02

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage metalloelastase

Related Entries With Identical Sequence