SMTL ID : 2wo8.4 (3 other biounits)

MMP12 complex with a beta hydroxy carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 023: N^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE(Non-covalent)

023.1: 17 residues within 4Å: Chain A: G.75, I.76, L.77, A.78, L.110, T.111, H.114, E.115, H.118, H.124, V.131, P.134, T.135, Y.136, K.137 Ligands: ZN.2, GOL.6 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.110, A:H.114, A:T.135, A:Y.136, A:K.137 Hydrogen bonds: A:G.75, A:L.77, A:P.134, A:Y.136

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.114, H.118, H.124 Ligands: 023.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.118, A:H.124 ZN.3: 4 residues within 4Å: Chain A: H.64, D.66, H.79, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: D.71, G.72, G.74, I.76, D.94, E.97 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.71, A:G.72, A:G.74, A:I.76, A:D.94, A:E.97 CA.5: 3 residues within 4Å: Chain A: D.20, E.95, E.97 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.20, A:E.95, A:E.95, A:E.97, H2O.3

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: L.77, T.106, Y.136 Ligands: 023.1, GOL.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.106 GOL.7: 6 residues within 4Å: Chain A: S.103, G.104, G.105, Y.136, Y.138 Ligands: GOL.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.105

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 7 residues within 4Å: Chain A: A.63, H.64, G.65, D.66, F.67, H.68, A.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.65, A:F.67 Water bridges: A:H.64, A:H.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holmes, I.P. et al., The Identification of Beta-Hydroxy Carboxylic Acids as Selective Mmp-12 Inhibitors. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-09-08

Peptides

MACROPHAGE METALLOELASTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

MACROPHAGE METALLOELASTASE

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