SMTL ID : 2woa.3 (3 other biounits)

MMP12 complex with a beta hydroxy carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.114, H.118, H.124 Ligands: 576.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.118, A:H.124 ZN.2: 4 residues within 4Å: Chain A: H.64, D.66, H.79, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.71, G.72, G.74, I.76, D.94, E.97 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.71, A:G.72, A:G.74, A:I.76, A:D.94, A:E.97 CA.4: 5 residues within 4Å: Chain A: D.54, G.86, I.87, G.88, D.90 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:G.86, A:G.88, A:D.90 CA.5: 3 residues within 4Å: Chain A: D.20, E.95, E.97 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.20, A:E.95, A:E.95, H2O.1, H2O.2

1 x 576: (3S)-5-(9H-FLUOREN-2-YL)-3-HYDROXYPENTANOIC ACID(Non-covalent)

576.6: 16 residues within 4Å: Chain A: L.77, A.78, L.110, T.111, H.114, E.115, H.118, H.124, A.130, V.131, F.133, P.134, T.135, Y.136, K.137 Ligands: ZN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:H.114, A:V.131, A:Y.136 Hydrogen bonds: A:L.77, A:A.78, A:A.78 Salt bridges: A:H.114, A:H.118, A:H.124 pi-Stacking: A:H.114

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 5 residues within 4Å: Chain A: T.100, T.101, H.102, S.103, G.104 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.101, A:T.101, A:H.102, A:G.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holmes, I.P. et al., The Identification of Beta-Hydroxy Carboxylic Acids as Selective Mmp-12 Inhibitors. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-09-08

Peptides

MACROPHAGE METALLOELASTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

MACROPHAGE METALLOELASTASE

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