SMTL ID : 2x51.1

M6 delta Insert1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: I.148, S.150, N.451, L.454, Q.455, F.458, F.556, R.641, S.666 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.451, A:R.641, A:R.641 Water bridges: A:F.434 GOL.2: 5 residues within 4Å: Chain A: L.230, E.231, K.232, S.233, C.446 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.232, A:S.233, A:S.233 Water bridges: A:L.230, A:K.232, A:S.233, A:S.233 GOL.3: 9 residues within 4Å: Chain A: R.205, F.206, G.207, L.229, E.231, I.431, A.432, I.447, F.621 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.205 Water bridges: A:A.432 GOL.4: 4 residues within 4Å: Chain A: R.199, E.435, Y.436, S.661 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.199, A:R.199, A:Y.436, A:Y.436, A:S.661 Water bridges: A:E.152 GOL.5: 10 residues within 4Å: Chain A: T.197, R.205, E.231, R.234, E.242, E.435, F.437, E.443, Q.444, I.447 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.205, A:R.205, A:E.231, A:R.234, A:E.242 Water bridges: A:V.198 GOL.6: 6 residues within 4Å: Chain A: E.152, S.153, T.197, N.200, S.203, R.205 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.153, A:K.157, A:K.157, A:N.200, A:S.203, A:R.205 Water bridges: A:S.204, A:S.204, A:S.204, A:G.433 GOL.7: 3 residues within 4Å: Chain A: R.546, D.547, D.548 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.547, A:D.548

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 7 residues within 4Å: Chain A: E.152, S.153, G.154, A.155, G.156, K.157, T.158 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.152, A:G.154, A:A.155, A:G.156, A:K.157, A:T.158, A:T.158 Salt bridges: A:K.157

3 x CA: CALCIUM ION(Non-covalent)

CA.9: 5 residues within 4Å: Chain B: D.21, K.22, D.23, T.27, E.32 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.23 CA.10: 5 residues within 4Å: Chain B: D.94, D.96, N.98, F.100, E.105 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.94, B:D.96, B:F.100, B:E.105, B:E.105 CA.11: 5 residues within 4Å: Chain B: D.130, D.132, D.134, Q.136, E.141 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.130, B:Q.136, B:E.141, B:E.141, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pylypenko, O. et al., Role of Insert-1 of Myosin Vi in Modulating Nucleotide Affinity. J.Biol.Chem. (2011)

Release Date

2011-01-26

Peptides

MYOSIN-VI: A
CALMODULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MYOSIN-VI

CALMODULIN

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