SMTL ID : 2xa7.1 (1 other biounit)

AP2 CLATHRIN ADAPTOR CORE IN ACTIVE COMPLEX WITH CARGO PEPTIDES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-oligomer

Ligands

1 x ASP- TYR- GLN- ARG- LEU- ASN: TGN38 CARGO PEPTIDE(Non-covalent)

ASP-TYR-GLN-ARG-LEU-ASN.1: 10 residues within 4Å: Chain C: F.174, L.175, D.176, V.412, L.415, K.431, W.432, V.433, R.434, Y.435 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:F.174, C:L.175, C:L.415, C:K.431, C:W.432, C:W.432, C:R.434 Hydrogen bonds: C:D.176, C:K.431, C:K.431, C:V.433, C:V.433, C:R.434 pi-Stacking: C:F.174

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.21 Chain D: K.13, R.15 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A Salt bridges: D:K.13, D:R.15 Hydrogen bonds: A:R.21 SO4.3: 4 residues within 4Å: Chain A: D.382, V.383, S.384 Chain D: R.42 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain A Salt bridges: D:R.42, D:H.46 Hydrogen bonds: A:D.382, A:V.383, A:S.384 SO4.4: 5 residues within 4Å: Chain A: H.527, V.562, S.565, S.567, Q.568 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.565, A:S.567, A:S.567, A:Q.568 Salt bridges: A:H.527 SO4.5: 7 residues within 4Å: Chain B: K.12, G.13, I.15, K.45 Chain D: D.43, A.44, R.61 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:D.43, D:A.44 Salt bridges: D:R.61, B:K.45 SO4.6: 3 residues within 4Å: Chain D: N.48, R.60, R.61 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.60, D:R.61 Salt bridges: D:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jackson, L.P. et al., A Large Scale Conformational Change Couples Membrane Recruitment to Cargo Binding in the Ap2 Clathrin Adaptor Complex. Cell(Cambridge,Mass.) (2010)

Release Date

2010-07-21

Peptides

ADAPTOR-RELATED PROTEIN COMPLEX 2, ALPHA 2 SUBUNIT: A
AP-2 COMPLEX SUBUNIT BETA: B
AP-2 COMPLEX SUBUNIT MU,: C
AP-2 COMPLEX SUBUNIT SIGMA: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
M

D
S

ADAPTOR-RELATED PROTEIN COMPLEX 2, ALPHA 2 SUBUNIT

AP-2 COMPLEX SUBUNIT BETA

AP-2 COMPLEX SUBUNIT MU,

AP-2 COMPLEX SUBUNIT SIGMA

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