SMTL ID : 2xlt.2 (1 other biounit)

Joint-functions of protein residues and NADP(H) in oxygen-activation by flavin-containing monooxygenase: complex with 3-Acetylpyridine adenine dinucleotide phosphate (APADP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 30 residues within 4Å: Chain A: G.14, G.16, P.17, S.18, F.42, E.43, K.44, Q.45, G.50, Q.51, W.52, H.68, S.70, M.71, L.75, S.77, N.78, L.84, T.129, A.130, V.131, C.166, T.167, G.168, F.170, Q.323, S.326, F.327, F.330 Ligands: NA0.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:L.75, A:F.170 Hydrogen bonds: A:G.16, A:S.18, A:S.18, A:S.18, A:K.44, A:Q.45, A:Q.51, A:Q.51, A:W.52, A:N.78, A:N.78, A:V.131, A:V.131, A:S.326 Water bridges: A:G.19, A:G.50, A:G.79, A:H.169, A:Q.323, A:Q.323, A:S.326 Salt bridges: A:H.68 pi-Stacking: A:W.52, A:W.52 pi-Cation interactions: A:K.44 FAD.8: 31 residues within 4Å: Chain B: G.14, G.16, P.17, S.18, F.42, E.43, K.44, Q.45, G.50, Q.51, W.52, H.68, S.70, M.71, L.75, S.77, N.78, L.84, T.129, A.130, V.131, C.166, T.167, G.168, F.170, F.285, Q.323, S.326, F.327, F.330 Ligands: NA0.9 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:L.75, B:F.170 Hydrogen bonds: B:S.18, B:S.18, B:K.44, B:Q.45, B:G.50, B:Q.51, B:Q.51, B:W.52, B:N.78, B:N.78, B:V.131, B:V.131, B:Q.323, B:S.326 Water bridges: B:G.16, B:S.18, B:S.18, B:G.19, B:S.77, B:G.79 Salt bridges: B:H.68 pi-Stacking: B:W.52, B:W.52

2 x NA0: 3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE PHOSPHATE(Non-covalent)

NA0.2: 22 residues within 4Å: Chain A: N.78, F.170, Y.174, P.176, F.178, V.208, S.210, S.211, Y.212, S.213, R.234, T.235, N.251, C.276, T.277, G.278, D.322, Q.323, W.324, F.402, W.405 Ligands: FAD.1 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:W.324, A:F.402, A:W.405 Hydrogen bonds: A:S.210, A:S.211, A:S.213, A:R.234, A:T.235, A:N.251, A:G.278, A:N.296 Water bridges: A:S.213, A:A.214, A:R.234, A:R.234, A:Y.279 Salt bridges: A:R.234 pi-Stacking: A:Y.212, A:W.324, A:W.324 pi-Cation interactions: A:R.234 NA0.9: 23 residues within 4Å: Chain B: N.78, F.170, Y.174, P.176, F.178, V.208, S.210, S.211, Y.212, S.213, R.234, T.235, N.251, C.276, T.277, G.278, Y.279, N.296, D.322, Q.323, W.324, W.405 Ligands: FAD.8 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:W.324, B:W.405 Hydrogen bonds: B:S.210, B:S.211, B:S.213, B:S.213, B:S.213, B:T.235, B:N.251, B:N.296 Water bridges: B:A.214, B:R.234, B:R.234, B:R.234, B:R.234, B:T.235, B:G.278, B:Y.279 Salt bridges: B:R.234 pi-Stacking: B:Y.212, B:W.324, B:W.324 pi-Cation interactions: B:R.234

8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 7 residues within 4Å: Chain A: F.184, G.185, G.186, E.258, K.269, V.270, D.271 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.269, A:V.270 PEG.4: 4 residues within 4Å: Chain A: D.256, E.258, N.259, K.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.259 PEG.5: 3 residues within 4Å: Chain A: Y.222, K.223, G.225 No protein-ligand interaction detected (PLIP) PEG.6: 4 residues within 4Å: Chain A: A.359, W.360, K.363, D.379 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.379 PEG.11: 4 residues within 4Å: Chain B: A.359, W.360, K.363, D.379 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.379 PEG.12: 10 residues within 4Å: Chain A: L.198, K.201 Chain B: F.184, G.185, G.186, T.257, E.258, K.269, V.270, D.271 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.269, B:V.270 PEG.13: 4 residues within 4Å: Chain B: D.256, E.258, N.259, K.269 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.259 PEG.14: 1 residues within 4Å: Chain B: R.234 No protein-ligand interaction detected (PLIP)

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.7: 5 residues within 4Å: Chain A: R.24, Q.27, E.31, K.118, A.119 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.27 Water bridges: A:R.24, A:E.31, A:K.118 Salt bridges: A:R.24, A:E.31, A:K.118 EPE.10: 5 residues within 4Å: Chain B: R.24, Q.27, E.31, K.118, A.119 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.27 Water bridges: B:K.118, B:K.118 Salt bridges: B:R.24, B:E.31, B:K.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orru, R. et al., Joint functions of protein residues and NADP(H) in oxygen activation by flavin-containing monooxygenase. J. Biol. Chem. (2010)

Release Date

2010-09-15

Peptides

FLAVIN-CONTAINING MONOOXYGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

FLAVIN-CONTAINING MONOOXYGENASE

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