SMTL ID : 2xlu.2 (1 other biounit)

Joint-functions of protein residues and NADP(H) in oxygen-activation by flavin-containing monooxygenase: complex with thioNADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 31 residues within 4Å: Chain A: G.14, G.16, P.17, S.18, F.42, E.43, K.44, Q.45, G.50, Q.51, W.52, H.68, S.70, M.71, L.75, S.77, N.78, L.84, T.129, A.130, V.131, C.166, T.167, G.168, F.170, F.285, Q.323, S.326, F.327, F.330 Ligands: NA7.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.75, A:F.170 Hydrogen bonds: A:G.16, A:S.18, A:S.18, A:S.18, A:K.44, A:Q.45, A:G.50, A:Q.51, A:W.52, A:N.78, A:V.131, A:V.131, A:Q.323, A:S.326 Water bridges: A:G.19, A:H.169 Salt bridges: A:H.68 pi-Stacking: A:W.52 pi-Cation interactions: A:K.44 FAD.7: 31 residues within 4Å: Chain B: G.14, G.16, P.17, S.18, F.42, E.43, K.44, Q.45, G.50, Q.51, W.52, H.68, S.70, M.71, L.75, S.77, N.78, L.84, T.129, A.130, V.131, C.166, T.167, G.168, F.170, F.285, Q.323, S.326, F.327, F.330 Ligands: NA7.8 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:L.75, B:F.170 Hydrogen bonds: B:G.16, B:S.18, B:S.18, B:K.44, B:Q.45, B:G.50, B:Q.51, B:W.52, B:N.78, B:V.131, B:V.131, B:S.326 Water bridges: B:S.18, B:G.19, B:Q.51, B:Q.323, B:R.417 Salt bridges: B:H.68 pi-Stacking: B:W.52, B:W.52

2 x NA7: [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE(Non-covalent)

NA7.2: 19 residues within 4Å: Chain A: N.78, F.170, Y.174, P.176, F.178, V.208, G.209, S.210, S.211, Y.212, S.213, R.234, T.235, N.251, C.276, T.277, G.278, Y.279 Ligands: FAD.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.210, A:S.211, A:S.213, A:S.213, A:R.234, A:T.235, A:N.251, A:G.278 Salt bridges: A:R.234 pi-Cation interactions: A:R.234 NA7.8: 20 residues within 4Å: Chain B: F.170, Y.174, P.176, F.178, V.208, G.209, S.210, S.211, Y.212, S.213, R.234, T.235, N.251, C.276, T.277, G.278, Y.279, D.322, Q.323 Ligands: FAD.7 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.210, B:S.210, B:S.211, B:Y.212, B:S.213, B:S.213, B:R.234, B:T.235, B:N.251, B:G.278, B:N.296, B:D.322 Water bridges: B:Y.279, B:Y.279 Salt bridges: B:R.234 pi-Cation interactions: B:R.234

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 5 residues within 4Å: Chain A: R.24, Q.27, E.31, K.118, A.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.27 Salt bridges: A:R.24, A:E.31, A:K.118 EPE.9: 5 residues within 4Å: Chain B: R.24, Q.27, E.31, K.118, A.119 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.27, B:K.118 Salt bridges: B:R.24, B:E.31, B:K.118

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 9 residues within 4Å: Chain A: F.184, G.185, G.186, T.257, E.258, K.269, V.270, D.271 Chain B: L.198 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:L.198, A:E.258 PEG.5: 3 residues within 4Å: Chain A: D.256, E.258, N.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.259, A:Y.261 PEG.6: 2 residues within 4Å: Chain A: W.360, K.363 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orru, R. et al., Joint-Functions of Protein Residues and Nadp(H) in Oxygen-Activation by Flavin-Containing Monooxygenase. J.Biol.Chem. (2010)

Release Date

2010-09-15

Peptides

FLAVIN-CONTAINING MONOOXYGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

FLAVIN-CONTAINING MONOOXYGENASE

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