SMTL ID : 2xow.1

Structure of GlpG in complex with a mechanism-based isocoumarin inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x ISM: 5-AMINO-2-(2-METHOXY-2-OXOETHYL)BENZOIC ACID(Covalent)

ISM.1: 16 residues within 4Å: Chain A: H.59, N.63, Q.98, F.106, G.107, G.108, L.109, S.110, Y.114, F.154, M.156, M.158, A.159, A.162, H.163 Ligands: BNG.17 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.162 Hydrogen bonds: A:N.63, A:G.107, A:G.107, A:S.110 Salt bridges: A:H.59, A:H.163

16 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)(Non-functional Binders)

BNG.2: 4 residues within 4Å: Chain A: M.9, A.12, T.87 Ligands: BNG.9 Ligand excluded by PLIP BNG.3: 5 residues within 4Å: Chain A: M.117, G.118, W.121, L.143, I.146 Ligand excluded by PLIP BNG.4: 4 residues within 4Å: Chain A: I.18, A.19, I.22, L.23 Ligand excluded by PLIP BNG.5: 4 residues within 4Å: Chain A: L.32, W.45, L.52 Ligands: BNG.7 Ligand excluded by PLIP BNG.6: 2 residues within 4Å: Chain A: L.93, I.164 Ligand excluded by PLIP BNG.7: 2 residues within 4Å: Chain A: W.31 Ligands: BNG.5 Ligand excluded by PLIP BNG.8: 3 residues within 4Å: Chain A: G.79, S.80, G.81 Ligand excluded by PLIP BNG.9: 5 residues within 4Å: Chain A: M.9, F.48, T.87, A.91 Ligands: BNG.2 Ligand excluded by PLIP BNG.10: 2 residues within 4Å: Chain A: L.153 Ligands: BNG.16 Ligand excluded by PLIP BNG.11: 1 residues within 4Å: Chain A: P.4 Ligand excluded by PLIP BNG.12: 4 residues within 4Å: Chain A: I.146, V.147, W.150, F.151 Ligand excluded by PLIP BNG.13: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP BNG.14: 3 residues within 4Å: Chain A: W.34, Y.96, Q.99 Ligand excluded by PLIP BNG.15: 1 residues within 4Å: Chain A: L.30 Ligand excluded by PLIP BNG.16: 7 residues within 4Å: Chain A: M.58, F.62, L.153, F.154, G.155 Ligands: BNG.10, BNG.17 Ligand excluded by PLIP BNG.17: 7 residues within 4Å: Chain A: M.58, H.59, F.62, F.154, M.156 Ligands: ISM.1, BNG.16 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vinothkumar, K.R. et al., The Structural Basis for Catalysis and Substrate Specificity of a Rhomboid Protease. Embo J. (2010)

Release Date

2010-10-13

Peptides

RHOMBOID PROTEASE GLPG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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RHOMBOID PROTEASE GLPG

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