SMTL ID : 2y5n.1 (1 other biounit)

Structure of the mixed-function P450 MycG in complex with mycinamicin V in P21 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: L.103, L.104, H.111, R.115, F.122, L.251, A.254, G.255, S.258, T.259, Q.262, F.306, R.308, G.358, F.359, G.360, V.363, H.364, C.366, L.367, G.368, A.372, E.375, L.376 Ligands: MYV.2 15 PLIP interactions: 14 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:L.104, A:F.122, A:L.251, A:A.254, A:Q.262, A:F.359, A:F.359, A:L.367, A:L.376 Salt bridges: A:H.111, A:R.115, A:R.308, A:H.364 Metal complexes: A:C.366, H2O.16

1 x MYV: MYCINAMICIN V(Non-covalent)

MYV.2: 19 residues within 4Å: Chain A: R.95, E.97, V.99, G.101, G.102, L.103, L.104, F.188, S.190, V.194, T.195, A.196, M.199, G.250, V.253, A.254, F.306, L.406 Ligands: HEM.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:E.97, A:V.99, A:V.99, A:F.188, A:V.253 Hydrogen bonds: A:R.95, A:G.101, A:L.104 Water bridges: A:G.101, A:E.257, A:E.257

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: R.133, I.137, E.140, R.165, S.175, H.178 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.133, A:R.133, A:E.140, A:R.165, A:R.165, A:S.175 Water bridges: A:S.175 GOL.4: 4 residues within 4Å: Chain A: T.38, L.39, A.40, G.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.41 Water bridges: A:R.42 GOL.5: 1 residues within 4Å: Chain A: E.312 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.312, A:E.312 GOL.6: 2 residues within 4Å: Chain A: G.211, D.215 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.215, A:E.241 Water bridges: A:D.215, A:E.241 GOL.7: 8 residues within 4Å: Chain A: R.160, T.191, T.260, T.261, A.264, G.409, P.410, L.411 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.160 GOL.8: 4 residues within 4Å: Chain A: R.160, T.191, E.193, L.411 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.160, A:R.160, A:E.193, A:L.411 Water bridges: A:E.193 GOL.9: 1 residues within 4Å: Chain A: D.345 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.345 GOL.10: 8 residues within 4Å: Chain A: R.93, T.94, V.302, G.303, T.304, A.305, M.405, L.406 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.94, A:T.94, A:G.303, A:L.406 Water bridges: A:T.94, A:R.95, A:G.303, A:A.305

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S. et al., Substrate Recognition by the Multifunctional Cytochrome P450 Mycg in Mycinamicin Hydroxylation and Epoxidation Reactions. J.Biol.Chem. (2012)

Release Date

2012-02-01

Peptides

P-450-LIKE PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

P-450-LIKE PROTEIN

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