SMTL ID : 2y5z.1 (2 other biounits)

Mixed-function P450 MycG in complex with mycinamicin III in C2221 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: L.103, L.104, H.111, R.115, F.122, L.251, A.254, G.255, S.258, T.259, Q.262, F.306, R.308, G.358, F.359, G.360, V.363, H.364, C.366, L.367, G.368, A.372, L.376 15 PLIP interactions: 14 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:L.104, A:F.122, A:L.251, A:A.254, A:Q.262, A:L.367, A:L.376 Water bridges: A:A.305 Salt bridges: A:H.111, A:R.115, A:R.308, A:H.364 pi-Stacking: A:F.359 Metal complexes: A:C.366, H2O.7

1 x ZM3: MYCINAMICIN III(Non-covalent)

ZM3.2: 13 residues within 4Å: Chain A: R.95, E.97, V.99, F.188, S.190, V.194, T.195, A.196, M.199, V.253, E.257, L.406, L.407 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.99, A:F.188, A:V.253, A:L.406, A:L.407 Hydrogen bonds: A:R.95 Water bridges: A:L.189 Salt bridges: A:R.95

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.3: 2 residues within 4Å: Chain A: H.139, R.386 No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: V.155, R.160, T.191, T.260, T.261, A.264, G.409, P.410, L.411 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.160 Water bridges: A:T.191 GOL.5: 8 residues within 4Å: Chain A: L.76, G.77, D.78, G.79, F.81, P.108, G.362, V.363 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.76, A:V.363 Water bridges: A:D.78, A:F.81, A:H.364, A:H.364 GOL.6: 8 residues within 4Å: Chain A: R.93, T.94, V.302, G.303, T.304, A.305, M.405, L.406 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.94, A:V.302, A:G.303, A:T.304 Water bridges: A:T.94, A:R.95 GOL.7: 4 residues within 4Å: Chain A: Q.338, A.339, F.341, P.342 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.339 Water bridges: A:D.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S. et al., Substrate Recognition by the Multifunctional Cytochrome P450 Mycg in Mycinamicin Hydroxylation and Epoxidation Reactions. J.Biol.Chem. (2012)

Release Date

2012-02-01

Peptides

P-450-LIKE PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

P-450-LIKE PROTEIN

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