SMTL ID : 2yca.1

Mixed-function P450 MycG in complex with mycinamicin III in P21212 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: L.103, L.104, H.111, R.115, F.122, L.251, A.254, G.255, S.258, T.259, Q.262, L.300, A.305, F.306, R.308, G.358, F.359, G.360, V.363, H.364, C.366, L.367, G.368, A.372, L.376 Ligands: ZM3.2 15 PLIP interactions: 14 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:F.122, A:L.251, A:Q.262, A:L.300, A:F.359, A:L.367, A:L.376 Hydrogen bonds: A:F.306 Salt bridges: A:H.111, A:R.115, A:R.308, A:H.364 pi-Stacking: A:F.359 Metal complexes: A:C.366, H2O.8

1 x ZM3: MYCINAMICIN III(Non-covalent)

ZM3.2: 18 residues within 4Å: Chain A: V.99, G.102, L.103, L.104, Y.207, G.250, V.253, A.254, E.257, L.300, G.301, T.304, F.306, T.331, L.406, L.407 Ligands: HEM.1, GOL.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.99, A:L.103, A:V.253, A:A.254, A:E.257, A:F.306, A:L.406 Hydrogen bonds: A:Y.207, A:Y.207 Water bridges: A:G.250, A:G.250

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: L.76, G.77, D.78, G.79, F.81, P.108, G.362, V.363 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.76, A:F.81, A:V.363 Water bridges: A:D.78, A:H.364 GOL.4: 9 residues within 4Å: Chain A: Y.29, P.92, R.93, G.303, T.304, A.305, P.307, L.328 Ligands: ZM3.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.304 Water bridges: A:E.91, A:G.303 GOL.5: 8 residues within 4Å: Chain A: R.160, T.191, T.260, T.261, A.264, G.409, P.410, L.411 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.160

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.6: 4 residues within 4Å: Chain A: A.146, R.386, L.387, W.417 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.386 Salt bridges: A:R.386

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S. et al., Substrate Recognition by the Multifunctional Cytochrome P450 Mycg in Mycinamicin Hydroxylation and Epoxidation Reactions. J.Biol.Chem. (2012)

Release Date

2012-03-28

Peptides

P-450-LIKE PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

P-450-LIKE PROTEIN

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