SMTL ID : 2y67.1

New 5-Benzylidenethiazolidine-4-one Inhibitors of Bacterial MurD Ligase: Design, Synthesis, Crystal Structures, and Biological Evaluation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x N21: (2R)-2-[[4-[[4-[(Z)-(2,4-dioxo-1,3-thiazolidin-5-ylidene)methyl]phenoxy]methyl]phenyl]sulfonylamino]pentanedioic acid(Non-covalent)

N21.1: 17 residues within 4Å: Chain A: I.12, G.13, D.36, T.37, R.38, S.72, G.74, I.75, F.162, H.184, T.322, K.349, A.415, S.416, L.417, N.422, F.423 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.415 Hydrogen bonds: A:T.37, A:T.37, A:T.322, A:S.416, A:L.417, A:F.423 Water bridges: A:T.17, A:G.18, A:S.160 Salt bridges: A:H.184, A:K.349

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: N.114, G.115, K.116, S.117, T.118, R.303, K.320 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.115, A:G.115, A:S.117, A:T.118 Water bridges: A:K.116, A:K.116, A:T.118, A:N.272 Salt bridges: A:R.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zidar, N. et al., New 5-Benzylidenethiazolidin-4-One Inhibitors of Bacterial Murd Ligase: Design, Synthesis, Crystal Structures, and Biological Evaluation. Eur.J.Med.Chem (2011)

Release Date

2011-10-19

Peptides

UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE

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