SMTL ID : 2y8q.1

Structure of the regulatory fragment of mammalian AMPK in complex with one ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain C: M.84, T.86, I.87, T.88, D.89, P.127, L.128, V.129, I.149, H.150, R.151, P.153 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:T.86, C:I.87, C:T.88, C:T.88, C:T.88, C:D.89, C:V.129, C:V.129, C:H.150, C:R.151 Salt bridges: C:H.150, C:H.150, C:R.151

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 13 residues within 4Å: Chain C: H.150, T.199, N.202, I.203, A.204, V.224, S.225, A.226, P.228, I.311, S.313, S.315, D.316 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:T.199, C:T.199, C:A.204, C:A.204, C:S.225, C:S.225, C:S.313, C:S.315, C:D.316 Water bridges: C:L.314, C:S.315 Salt bridges: C:H.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, B. et al., Structure of Mammalian Ampk and its Regulation by Adp. Nature (2011)

Release Date

2011-03-16

Peptides

5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1: A
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2: B
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1

5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2

5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1

Related Entries With Identical Sequence