SMTL ID : 2ydw.1 (1 other biounit)

Crystal Structure of the First Bromodomain of Human Brd2 with the inhibitor GW841819X

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x WSH: BENZYL [(4R)-1-METHYL-6-PHENYL-4H-[1,2,4]TRIAZOLO[4,3-A][1,4]BENZODIAZEPIN-4-YL]CARBAMATE(Non-covalent)

WSH.1: 10 residues within 4Å: Chain A: W.51, P.52, F.53, V.57, L.62, L.64, Y.109, N.110, I.116, M.119 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.51, A:P.52, A:F.53, A:V.57, A:L.62, A:L.64, A:Y.109, A:I.116 Hydrogen bonds: A:N.110, A:N.110 WSH.3: 10 residues within 4Å: Chain B: W.51, P.52, F.53, V.57, L.62, L.64, Y.109, N.110, I.116, M.119 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.51, B:P.52, B:F.53, B:V.57, B:L.62, B:L.64, B:Y.109, B:I.116 Hydrogen bonds: B:N.110, B:N.110 Water bridges: B:Y.67, B:Y.67

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.82, N.86, Y.88 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.86 Water bridges: A:R.82, A:R.82 Salt bridges: A:R.82 SO4.4: 3 residues within 4Å: Chain B: R.82, N.86, Y.88 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.86 Water bridges: B:R.82, B:R.82 Salt bridges: B:R.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, C.W. et al., Discovery and Characterization of Small Molecule Inhibitors of the Bet Family Bromodomains. J.Med.Chem. (2011)

Release Date

2011-06-15

Peptides

BROMODOMAIN-CONTAINING PROTEIN 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

BROMODOMAIN-CONTAINING PROTEIN 2

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