SMTL ID : 4akn.1 (1 other biounit)

N-Terminal Bromodomain of Human BRD2 With tbutyl-phenyl-amino- dimethyl-oxazolyl-quinoline-carboxylic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: N.100, T.104, Y.107, E.124 Chain B: N.100, F.103, T.104, Y.107, E.124 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.100, A:T.104, B:N.100 Water bridges: A:E.124

2 x S5B: 4-[(2-tert-butylphenyl)amino]-7-(3,5-dimethyl-1,2-oxazol-4-yl)quinoline-3-carboxylic acid(Non-covalent)

S5B.2: 10 residues within 4Å: Chain A: W.51, P.52, F.53, V.57, K.61, L.62, L.64, C.106, N.110, I.116 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.51, A:W.51, A:F.53, A:V.57, A:L.62, A:L.64, A:I.116 Hydrogen bonds: A:N.110 Water bridges: A:Q.55, A:K.61, A:K.61, A:C.106 Salt bridges: A:K.61 S5B.5: 11 residues within 4Å: Chain B: W.51, P.52, F.53, V.57, K.61, L.62, L.64, C.106, Y.109, N.110, I.116 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.51, B:W.51, B:F.53, B:V.57, B:L.62, B:L.64, B:Y.109 Hydrogen bonds: B:N.110 Water bridges: B:Q.55, B:C.106 Salt bridges: B:K.61

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: R.54 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.54, A:R.54 Salt bridges: A:R.54 SO4.4: 3 residues within 4Å: Chain A: T.79, R.82, R.83 5 PLIP interactions: 5 interactions with chain A Water bridges: A:N.86, A:Y.88, A:Y.88 Salt bridges: A:R.82, A:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seal, J. et al., Identification of a Novel Series of Bet Family Bromodomain Inhibitors: Binding Mode and Profile of I-Bet151 (Gsk1210151A). Bioorg.Med.Chem.Lett. (2012)

Release Date

2012-07-04

Peptides

BROMODOMAIN-CONTAINING PROTEIN 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BROMODOMAIN-CONTAINING PROTEIN 2

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