- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 1 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.3: 5 residues within 4Å:- Chain A: S.45, N.285, V.297, N.298
- Chain B: E.69
No protein-ligand interaction detected (PLIP)NAG-NAG.5: 4 residues within 4Å:- Chain B: A.147, E.150, N.154, T.156
No protein-ligand interaction detected (PLIP)NAG-NAG.6: 4 residues within 4Å:- Chain C: Q.80, N.81, E.119, F.120
No protein-ligand interaction detected (PLIP)NAG-NAG.8: 5 residues within 4Å:- Chain C: S.45, N.285, V.297, N.298
- Chain D: E.69
No protein-ligand interaction detected (PLIP)NAG-NAG.11: 5 residues within 4Å:- Chain E: S.45, N.285, V.297, N.298
- Chain F: E.69
No protein-ligand interaction detected (PLIP)- 2 x BGC- GAL- NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Post Translational Modification)
BGC-GAL-NAG-GAL-SIA.4: 13 residues within 4Å:- Chain A: Y.98, G.134, G.135, S.136, N.137, W.153, K.156, H.183, E.190, S.193, L.194, L.226, S.228
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.156, A:S.193, A:Y.98, A:G.135, A:N.137, A:N.137, A:H.183, A:S.228
- Salt bridges: A:K.156
BGC-GAL-NAG-GAL-SIA.12: 13 residues within 4Å:- Chain E: Y.98, G.134, G.135, S.136, N.137, W.153, K.156, H.183, E.190, L.194, G.225, L.226, S.228
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:G.225, E:G.135, E:N.137, E:N.137, E:E.190, E:S.228
- Hydrophobic interactions: E:W.153
- 1 x GAL- NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose(Non-covalent)
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.13: 3 residues within 4Å:- Chain A: N.38, T.318
- Chain B: L.52
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.318
NAG.19: 3 residues within 4Å:- Chain C: N.38, T.318
- Chain D: L.52
1 PLIP interactions:1 interactions with chain C- Water bridges: C:N.38
NAG.23: 4 residues within 4Å:- Chain D: A.147, E.150, N.154, T.156
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:N.154
NAG.25: 5 residues within 4Å:- Chain E: Q.80, N.81, E.119, F.120, I.121
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:E.119
NAG.29: 4 residues within 4Å:- Chain F: A.147, E.150, N.154, T.156
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:N.154
- 13 x FLC: CITRATE ANION(Non-covalent)
FLC.14: 4 residues within 4Å:- Chain A: I.34, R.321
- Chain B: A.7
- Chain D: Q.47
4 PLIP interactions:2 interactions with chain D, 1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: D:Q.47
- Salt bridges: D:K.117, A:R.321
- Water bridges: B:G.1
FLC.15: 4 residues within 4Å:- Chain A: T.128, V.163, L.164, N.165
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.128, A:T.128, A:V.163, A:N.165
FLC.16: 6 residues within 4Å:- Chain B: Y.94, E.97, L.98
- Chain D: R.54, V.55, L.99
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.54
- Salt bridges: D:R.54, D:R.54
FLC.17: 6 residues within 4Å:- Chain B: R.54, V.55, K.58, L.99
- Chain F: Y.94, E.97
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Water bridges: A:K.307
- Hydrogen bonds: B:R.54
- Salt bridges: B:R.54
FLC.18: 4 residues within 4Å:- Chain A: R.269
- Chain B: E.69, F.70, S.71
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Salt bridges: A:R.269, A:R.269
- Hydrogen bonds: B:E.69, B:S.71
FLC.20: 5 residues within 4Å:- Chain C: D.31, R.321
- Chain D: A.7
- Chain F: A.43, Q.47
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain F- Salt bridges: C:R.321
- Hydrogen bonds: F:Q.47
FLC.21: 5 residues within 4Å:- Chain A: Y.100, D.101, V.102, Y.105
- Chain C: R.208
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: A:Y.105
- Hydrogen bonds: A:S.95, A:V.102, C:R.208
- Water bridges: A:Y.100
- Salt bridges: C:R.208, C:R.208
FLC.22: 6 residues within 4Å:- Chain C: T.126, T.128, N.165, V.166, T.167
- Ligands: NAG-NAG-BMA.7
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:T.167
FLC.24: 7 residues within 4Å:- Chain D: Y.94, E.97, L.98
- Chain E: P.293
- Chain F: R.54, V.55, L.99
4 PLIP interactions:3 interactions with chain F, 1 interactions with chain D- Hydrophobic interactions: F:L.99, F:L.99, D:Y.94
- Salt bridges: F:R.54
FLC.26: 5 residues within 4Å:- Chain B: Q.47
- Chain E: D.31, I.34, R.321
- Chain F: A.7
5 PLIP interactions:1 interactions with chain B, 2 interactions with chain E, 2 interactions with chain F- Salt bridges: B:K.117, E:R.321
- Hydrogen bonds: E:D.31
- Water bridges: F:G.1, F:G.1
FLC.27: 4 residues within 4Å:- Chain E: D.77, Q.80, R.141, S.149
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:Q.80
- Water bridges: E:R.255
- Salt bridges: E:R.141, E:R.150, E:R.255
FLC.28: 3 residues within 4Å:- Chain E: T.40, E.41, K.292
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:T.40, E:E.41, E:K.292
- Salt bridges: E:K.292, E:K.292, E:K.292
FLC.30: 3 residues within 4Å:- Chain B: R.123
- Chain D: R.123
- Chain F: R.123
8 PLIP interactions:2 interactions with chain D, 2 interactions with chain B, 4 interactions with chain F- Water bridges: D:R.123, F:R.123, F:R.123
- Salt bridges: D:R.123, B:R.123, F:R.123, F:R.123
- Hydrogen bonds: B:R.123
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, Y.P. et al., Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-11-07
- Peptides
- HEMAGGLUTININ HA1 CHAIN: ACE
HEMAGGLUTININ HA2 CHAIN: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EB
BD
DF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 1 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x BGC- GAL- NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Post Translational Modification)
- 1 x GAL- NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose(Non-covalent)
- 1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 13 x FLC: CITRATE ANION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, Y.P. et al., Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-11-07
- Peptides
- HEMAGGLUTININ HA1 CHAIN: ACE
HEMAGGLUTININ HA2 CHAIN: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EB
BD
DF
F