SMTL ID : 2z50.1

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with BPH-28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-dimer

Ligands

2 x 028: (1-HYDROXYHEPTANE-1,1-DIYL)BIS(PHOSPHONIC ACID)(Non-covalent)

028.1: 9 residues within 4Å: Chain A: D.80, D.84, R.89, L.143, Q.147, K.174, Q.211, D.214, K.238 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:D.80, A:L.143, A:Q.147 Hydrogen bonds: A:D.80, A:D.80, A:R.89, A:R.89, A:Q.211, A:K.238 Water bridges: A:D.84, A:D.150, A:T.175, A:Q.211, A:D.215, A:E.236 028.2: 10 residues within 4Å: Chain B: S.76, D.80, D.84, R.89, Q.147, D.150, K.174, Q.211, D.214, K.238 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Q.147 Hydrogen bonds: B:D.80, B:D.80, B:R.89, B:R.89, B:D.150, B:Q.211, B:D.214, B:K.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C.K.-M. et al., Inhibition of geranylgeranyl diphosphate synthase by bisphosphonates: a crystallographic and computational investigation. J.Med.Chem. (2008)

Release Date

2008-07-01

Peptides

Geranylgeranyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl pyrophosphate synthetase

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