SMTL ID : 2z78.1

S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with BPH-806

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x H86: 3-(decyloxy)-5-(3,5-difluorophenyl)-1-(2,2-diphosphonoethyl)pyridinium(Non-covalent)

H86.1: 23 residues within 4Å: Chain A: R.44, I.48, V.69, H.73, S.76, L.77, I.79, D.80, E.83, D.84, R.89, L.143, H.144, Q.147, K.174, T.175, F.179, T.182, Y.210, Q.211, D.214, K.238, L.340 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:R.44, A:I.48, A:V.69, A:D.80, A:Q.147, A:K.174, A:T.175, A:F.179, A:Y.210 Hydrogen bonds: A:D.80, A:D.80, A:D.80, A:R.89, A:R.89, A:Q.211, A:D.214, A:K.238 Water bridges: A:Q.147, A:Q.147, A:D.215 H86.2: 22 residues within 4Å: Chain B: R.44, L.47, V.69, H.73, S.76, L.77, I.79, D.80, E.83, D.84, R.89, L.143, H.144, Q.147, K.174, L.178, F.179, T.182, Y.210, Q.211, D.214, K.238 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:R.44, B:L.47, B:V.69, B:D.80, B:L.143, B:L.143, B:Q.147, B:K.174, B:L.178, B:F.179, B:T.182, B:Y.210 Hydrogen bonds: B:D.80, B:D.80, B:R.89, B:R.89, B:K.174, B:Q.211, B:K.238 Water bridges: B:D.84 Halogen bonds: B:L.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C.K.-M. et al., Inhibition of geranylgeranyl diphosphate synthase by bisphosphonates: a crystallographic and computational investigation. J.Med.Chem. (2008)

Release Date

2008-07-08

Peptides

Geranylgeranyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl pyrophosphate synthetase

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