SMTL ID : 2zeu.1

S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase in Complex with BPH-715

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x B71: 3-(DECYLOXY)-1-(2,2-DIPHOSPHONOETHYL)PYRIDINIUM(Non-covalent)

B71.1: 15 residues within 4Å: Chain A: L.47, V.69, H.73, L.77, D.80, R.89, K.174, T.175, L.178, F.179, T.182, Q.211, D.214, K.238, L.340 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.47, A:V.69, A:K.174, A:L.178, A:F.179, A:F.179, A:T.182, A:L.340 Hydrogen bonds: A:R.89, A:R.89, A:Q.211, A:Q.211, A:K.238 Water bridges: A:D.215 B71.2: 16 residues within 4Å: Chain B: R.44, L.47, V.69, H.73, L.77, D.80, R.89, K.174, L.178, F.179, T.182, Y.210, Q.211, D.214, K.238, L.340 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:R.44, B:L.47, B:V.69, B:K.174, B:L.178, B:F.179, B:L.340 Hydrogen bonds: B:R.89, B:R.89, B:K.174, B:Q.211, B:Q.211, B:K.238 Water bridges: B:D.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Lipophilic bisphosphonates as dual farnesyl/geranylgeranyl diphosphate synthase inhibitors: an X-ray and NMR investigation. J.Am.Chem.Soc. (2009)

Release Date

2008-12-23

Peptides

Geranylgeranyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl pyrophosphate synthetase

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