SMTL ID : 2znp.1

Human PPAR delta ligand binding domain in complex with a synthetic agonist TIPP204

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x B7G: heptyl beta-D-glucopyranoside(Non-covalent)

B7G.1: 12 residues within 4Å: Chain A: V.92, T.96, V.114, L.117, K.118, L.267, E.270 Chain B: L.110, N.111, V.114, T.115 Ligands: B7G.3 13 PLIP interactions: 4 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:L.110, B:N.111, A:V.92, A:V.114, A:L.117, A:K.118, A:L.267, A:E.270 Hydrogen bonds: B:T.115, B:T.115, A:K.118, A:E.270 Salt bridges: A:K.118 B7G.3: 11 residues within 4Å: Chain A: L.110, N.111, V.114 Chain B: V.92, T.96, V.114, L.117, K.118, E.270, K.273 Ligands: B7G.1 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.92, B:V.114, B:L.117, A:L.110, A:N.111 Hydrogen bonds: B:E.270, B:K.273, A:N.111 Salt bridges: B:K.118, B:K.273

2 x K55: (2S)-2-{4-butoxy-3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]benzyl}butanoic acid(Non-covalent)

K55.2: 20 residues within 4Å: Chain A: L.54, V.80, F.81, R.83, C.84, T.87, T.88, H.122, L.129, V.133, L.138, V.140, V.147, I.162, K.166, F.167, H.248, M.252, L.268, Y.272 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.80, A:F.81, A:R.83, A:T.88, A:L.129, A:V.133, A:V.140, A:I.162, A:K.166, A:F.167, A:F.167, A:L.268 Hydrogen bonds: A:T.87 Salt bridges: A:H.122, A:H.248 K55.4: 23 residues within 4Å: Chain B: W.63, V.80, F.81, R.83, C.84, Q.85, T.87, T.88, H.122, F.126, L.129, V.133, L.138, V.140, V.147, L.152, I.162, I.163, K.166, F.167, H.248, L.268, Y.272 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.80, B:F.81, B:R.83, B:Q.85, B:F.126, B:L.129, B:V.133, B:L.138, B:L.138, B:V.140, B:V.147, B:I.162, B:K.166, B:K.166, B:F.167, B:F.167, B:L.268 Hydrogen bonds: B:Y.272 Salt bridges: B:H.122, B:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oyama, T. et al., Adaptability and selectivity of human peroxisome proliferator-activated receptor (PPAR) pan agonists revealed from crystal structures. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-05-05

Peptides

Peroxisome proliferator-activated receptor delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor delta

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