- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-oligomer
- Ligands
- 18 x ZN: ZINC ION(Non-covalent)
- 12 x TRP: TRYPTOPHAN(Non-covalent)
TRP.7: 16 residues within 4Å:- Chain A: V.19, G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53
- Chain N: T.23, R.24, G.25, D.27, T.28, S.51
11 PLIP interactions:7 interactions with chain A, 4 interactions with chain N- Hydrophobic interactions: A:V.19, A:A.44, A:T.50, A:I.53, N:T.28
- Hydrogen bonds: A:T.50, A:T.50, A:T.50, N:G.25, N:G.25, N:S.51
TRP.8: 14 residues within 4Å:- Chain A: T.23, R.24, G.25, D.27, T.28, S.51
- Chain B: G.21, H.31, A.44, Q.45, T.47, H.49, T.50, I.53
11 PLIP interactions:4 interactions with chain A, 7 interactions with chain B,- Hydrophobic interactions: A:T.28, B:A.44, B:T.50, B:I.53
- Hydrogen bonds: A:G.25, A:G.25, A:S.51, B:Q.45, B:T.50, B:T.50, B:T.50
TRP.9: 15 residues within 4Å:- Chain B: T.23, R.24, G.25, D.27, T.28, S.51
- Chain C: G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53
11 PLIP interactions:7 interactions with chain C, 4 interactions with chain B,- Hydrophobic interactions: C:A.44, C:T.50, C:I.53, B:T.28
- Hydrogen bonds: C:Q.45, C:T.50, C:T.50, B:G.25, B:G.25, B:S.51
- Salt bridges: C:H.49
TRP.10: 15 residues within 4Å:- Chain C: T.23, R.24, G.25, D.27, T.28, S.51
- Chain D: G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53
12 PLIP interactions:8 interactions with chain D, 4 interactions with chain C,- Hydrophobic interactions: D:A.44, D:T.50, D:I.53, C:T.28
- Hydrogen bonds: D:Q.45, D:T.50, D:T.50, D:T.50, C:G.25, C:G.25, C:S.51
- Salt bridges: D:H.49
TRP.17: 16 residues within 4Å:- Chain K: V.19, G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53
- Chain X: T.23, R.24, G.25, D.27, T.28, S.51
11 PLIP interactions:4 interactions with chain X, 7 interactions with chain K,- Hydrophobic interactions: X:T.28, K:V.19, K:A.44, K:T.50, K:I.53
- Hydrogen bonds: X:G.25, X:G.25, X:S.51, K:T.50, K:T.50, K:T.50
TRP.18: 14 residues within 4Å:- Chain K: T.23, R.24, G.25, D.27, T.28, S.51
- Chain L: G.21, H.31, A.44, Q.45, T.47, H.49, T.50, I.53
11 PLIP interactions:4 interactions with chain K, 7 interactions with chain L,- Hydrophobic interactions: K:T.28, L:A.44, L:T.50, L:I.53
- Hydrogen bonds: K:G.25, K:G.25, K:S.51, L:Q.45, L:T.50, L:T.50, L:T.50
TRP.19: 15 residues within 4Å:- Chain L: T.23, R.24, G.25, D.27, T.28, S.51
- Chain M: G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53
10 PLIP interactions:6 interactions with chain M, 4 interactions with chain L,- Hydrophobic interactions: M:A.44, M:T.50, M:I.53, L:T.28
- Hydrogen bonds: M:T.50, M:T.50, L:G.25, L:G.25, L:S.51
- Salt bridges: M:H.49
TRP.20: 15 residues within 4Å:- Chain M: T.23, R.24, G.25, D.27, T.28, S.51
- Chain N: G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53
12 PLIP interactions:4 interactions with chain M, 8 interactions with chain N,- Hydrophobic interactions: M:T.28, N:A.44, N:T.50, N:I.53
- Hydrogen bonds: M:G.25, M:G.25, M:S.51, N:Q.45, N:T.50, N:T.50, N:T.50
- Salt bridges: N:H.49
TRP.27: 16 residues within 4Å:- Chain D: T.23, R.24, G.25, D.27, T.28, S.51
- Chain U: V.19, G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53
11 PLIP interactions:7 interactions with chain U, 4 interactions with chain D- Hydrophobic interactions: U:V.19, U:A.44, U:T.50, U:I.53, D:T.28
- Hydrogen bonds: U:T.50, U:T.50, U:T.50, D:G.25, D:G.25, D:S.51
TRP.28: 14 residues within 4Å:- Chain U: T.23, R.24, G.25, D.27, T.28, S.51
- Chain V: G.21, H.31, A.44, Q.45, T.47, H.49, T.50, I.53
10 PLIP interactions:3 interactions with chain U, 7 interactions with chain V,- Hydrogen bonds: U:G.25, U:G.25, U:S.51, V:Q.45, V:T.50, V:T.50, V:T.50
- Hydrophobic interactions: V:A.44, V:T.50, V:I.53
TRP.29: 15 residues within 4Å:- Chain V: T.23, R.24, G.25, D.27, T.28, S.51
- Chain W: G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53
10 PLIP interactions:4 interactions with chain V, 6 interactions with chain W,- Hydrophobic interactions: V:T.28, W:A.44, W:T.50, W:I.53
- Hydrogen bonds: V:G.25, V:G.25, V:S.51, W:T.50, W:T.50
- Salt bridges: W:H.49
TRP.30: 15 residues within 4Å:- Chain W: T.23, R.24, G.25, D.27, T.28, S.51
- Chain X: G.21, H.31, H.32, A.44, Q.45, T.47, H.49, T.50, I.53
12 PLIP interactions:8 interactions with chain X, 4 interactions with chain W,- Hydrophobic interactions: X:A.44, X:T.50, X:I.53, W:T.28
- Hydrogen bonds: X:Q.45, X:T.50, X:T.50, X:T.50, W:G.25, W:G.25, W:S.51
- Salt bridges: X:H.49
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Watanabe, M. et al., The nature of the TRAP-Anti-TRAP complex. Proc.Natl.Acad.Sci.USA (2009)
- Release Date
- 2009-02-03
- Peptides
- Transcription attenuation protein mtrB: ABCDKLMNUVWX
Tryptophan RNA-binding attenuator protein-inhibitory protein: EFGHIJOPQRSTYZ0123 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DK
AL
BM
CN
DU
AV
BW
CX
DE
EF
FG
GH
HI
IJ
JO
EP
FQ
GR
HS
IT
JY
EZ
F0
G1
H2
I3
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-oligomer
- Ligands
- 18 x ZN: ZINC ION(Non-covalent)
- 12 x TRP: TRYPTOPHAN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Watanabe, M. et al., The nature of the TRAP-Anti-TRAP complex. Proc.Natl.Acad.Sci.USA (2009)
- Release Date
- 2009-02-03
- Peptides
- Transcription attenuation protein mtrB: ABCDKLMNUVWX
Tryptophan RNA-binding attenuator protein-inhibitory protein: EFGHIJOPQRSTYZ0123 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DK
AL
BM
CN
DU
AV
BW
CX
DE
EF
FG
GH
HI
IJ
JO
EP
FQ
GR
HS
IT
JY
EZ
F0
G1
H2
I3
J