SMTL ID : 2zvl.1 (1 other biounit)

Crystal structure of PCNA in complex with DNA polymerase kappa fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-3-3-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: E.238, G.245, H.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.238, A:E.238 Salt bridges: A:H.246 SO4.4: 4 residues within 4Å: Chain E: R.53, E.238, G.245, H.246 2 PLIP interactions: 2 interactions with chain E Salt bridges: E:R.53, E:H.246

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain C: H.246 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.246, H2O.2 ZN.3: 3 residues within 4Å: Chain C: H.44 Chain D: H.3, D.6 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain D Metal complexes: C:H.44, D:H.3, D:D.6, D:D.6 ZN.5: 3 residues within 4Å: Chain E: H.44 Chain F: H.3, D.6 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain F Metal complexes: E:H.44, F:H.3, F:D.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hishiki, A. et al., Structural Basis for Novel Interactions between Human Translesion Synthesis Polymerases and Proliferating Cell Nuclear Antigen. J.Biol.Chem. (2009)

Release Date

2009-02-10

Peptides

Proliferating cell nuclear antigen: ACE
DNA polymerase kappa: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

B
U

D
V

F
W

Proliferating cell nuclear antigen

DNA polymerase kappa

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