SMTL ID : 2zzm.1

The complex structure of aTrm5 and tRNALeu

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 22 residues within 4Å: Chain A: E.143, F.144, R.145, Y.177, F.178, S.179, L.182, R.186, F.203, G.205, P.208, F.209, D.223, I.224, N.225, S.250, D.251, V.252, N.265, L.266, F.273 Chain B: G.40 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.177 Hydrogen bonds: A:S.179, A:I.224, A:N.225, A:D.251, A:V.252, A:N.265 Water bridges: A:Y.177, A:F.203, A:N.225 Salt bridges: A:R.186 pi-Stacking: A:F.203, A:F.203

5 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 2 residues within 4Å: Chain B: C.22, A.71 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain B: G.51, A.53 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain B: G.34, C.35 No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain B: U.37 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goto-Ito, S. et al., Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation. Nat.Struct.Mol.Biol. (2009)

Release Date

2009-09-15

Peptides

Uncharacterized protein MJ0883: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein MJ0883

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