SMTL ID : 3a5c.1 (1 other biounit)

Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.51 Å

Oligo State

hetero-3-3-1-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 11 residues within 4Å: Chain A: P.229, F.230, G.231, S.232, G.233, K.234, T.235, V.236, A.499 Chain F: S.359, R.360 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:G.231, A:S.232, A:G.233, A:K.234, A:T.235, A:V.236, F:R.360 ADP.2: 10 residues within 4Å: Chain C: F.230, G.231, S.232, G.233, K.234, T.235, V.236 Chain E: L.358, S.359, R.360 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:G.231, C:S.232, C:G.233, C:K.234, C:T.235, C:V.236, E:S.359, E:S.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Numoto, N. et al., Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase. Embo Rep. (2009)

Release Date

2009-10-13

Peptides

V-type ATP synthase alpha chain: ABC
V-type ATP synthase beta chain: DEF
V-type ATP synthase subunit D: G
V-type ATP synthase subunit F: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

V-type ATP synthase alpha chain

V-type ATP synthase beta chain

V-type ATP synthase subunit D

V-type ATP synthase subunit F

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