SMTL ID : 6r0w.1

Thermus thermophilus V/A-type ATPase/synthase, rotational state 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-2-2-1-1-12-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain C: K.234, T.235, E.257, R.258 Ligands: ADP.2 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.235, C:E.257

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 17 residues within 4Å: Chain C: P.229, F.230, G.231, S.232, G.233, K.234, T.235, V.236, E.261, F.419, Q.497, N.498, A.499, Y.500 Chain E: R.360, N.363 Ligands: MG.1 17 PLIP interactions: 14 interactions with chain C, 3 interactions with chain E Hydrogen bonds: C:G.231, C:S.232, C:G.233, C:K.234, C:T.235, C:T.235, C:T.235, C:V.236, C:Q.497, C:A.499, C:Y.500, C:Y.500, E:N.363 Salt bridges: C:K.234, E:R.360, E:R.360 pi-Stacking: C:F.419 ADP.3: 13 residues within 4Å: Chain C: K.8, A.10, A.13, I.15, F.48, S.339, R.340 Chain E: L.18, F.20, E.49, A.273, R.274, E.275 8 PLIP interactions: 3 interactions with chain E, 1 interactions with chain G, 4 interactions with chain C Hydrogen bonds: E:R.274, E:R.274, E:E.275, C:K.8, C:S.339 pi-Cation interactions: G:K.200 Salt bridges: C:K.8, C:K.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, L. et al., Structure and conformational plasticity of the intact Thermus thermophilus V/A-type ATPase. Science (2019)

Release Date

2019-08-28

Peptides

V-type ATP synthase alpha chain: ABC
V-type ATP synthase beta chain: DEF
V-type ATP synthase subunit D: G
V-type ATP synthase subunit F: H
V-type ATP synthase, subunit (VAPC-THERM): IK
V-type ATP synthase subunit E: JL
V-type ATP synthase subunit C: M
V-type ATP synthase subunit I: N
V-type ATP synthase, subunit K: OPQRSTUVWXYZ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

K
K

J
J

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

Membrane

We predict this structure to be a membrane protein.
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V-type ATP synthase alpha chain

V-type ATP synthase beta chain

V-type ATP synthase subunit D

V-type ATP synthase subunit F

V-type ATP synthase, subunit (VAPC-THERM)

V-type ATP synthase subunit E

V-type ATP synthase subunit C

V-type ATP synthase subunit I

V-type ATP synthase, subunit K

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