SMTL ID : 3j0j.1

Fitted atomic models of Thermus thermophilus V-ATPase subunits into cryo-EM map

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-2-2-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 11 residues within 4Å: Chain A: P.229, F.230, G.231, S.232, G.233, K.234, T.235, V.236, A.499 Chain F: S.359, R.360 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.231, A:S.232, A:G.233, A:K.234, A:T.235, A:V.236 ADP.2: 10 residues within 4Å: Chain C: P.229, F.230, G.231, S.232, G.233, K.234, T.235, V.236 Chain E: S.359, R.360 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:G.231, C:S.232, C:G.233, C:K.234, C:T.235, C:V.236, E:S.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lau, W.C. et al., Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase. Nature (2012)

Release Date

2011-12-14

Peptides

V-type ATP synthase alpha chain: ABC
V-type ATP synthase beta chain: DEF
V-type ATP synthase subunit D: G
V-type ATP synthase subunit F: H
V-type ATP synthase, subunit (VAPC-THERM): IK
V-type ATP synthase subunit E: JL
V-type ATP synthase subunit C: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

K
K

J
J

L
L

M
M

V-type ATP synthase alpha chain

V-type ATP synthase beta chain

V-type ATP synthase subunit D

V-type ATP synthase subunit F

V-type ATP synthase, subunit (VAPC-THERM)

V-type ATP synthase subunit E

V-type ATP synthase subunit C

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