- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 21 x NA: SODIUM ION(Non-functional Binders)
NA.4: 4 residues within 4Å:- Chain A: L.294, S.295, Y.334
- Chain B: P.148
Ligand excluded by PLIPNA.5: 3 residues within 4Å:- Chain A: I.235, G.238, A.239
Ligand excluded by PLIPNA.6: 4 residues within 4Å:- Chain A: D.398, I.400
- Chain B: V.86, R.88
Ligand excluded by PLIPNA.8: 4 residues within 4Å:- Chain B: L.107, H.110, S.111
- Chain C: V.45
Ligand excluded by PLIPNA.12: 1 residues within 4Å:- Chain C: D.69
Ligand excluded by PLIPNA.14: 5 residues within 4Å:- Chain D: S.181, E.239, R.240, S.246, S.248
Ligand excluded by PLIPNA.15: 4 residues within 4Å:- Chain C: V.195
- Chain D: S.271, N.272, T.278
Ligand excluded by PLIPNA.19: 4 residues within 4Å:- Chain E: L.294, S.295, Y.334
- Chain F: P.148
Ligand excluded by PLIPNA.20: 3 residues within 4Å:- Chain E: I.235, G.238, A.239
Ligand excluded by PLIPNA.21: 4 residues within 4Å:- Chain E: D.398, I.400
- Chain F: V.86, R.88
Ligand excluded by PLIPNA.23: 4 residues within 4Å:- Chain F: L.107, H.110, S.111
- Chain G: V.45
Ligand excluded by PLIPNA.27: 1 residues within 4Å:- Chain G: D.69
Ligand excluded by PLIPNA.29: 5 residues within 4Å:- Chain H: S.181, E.239, R.240, S.246, S.248
Ligand excluded by PLIPNA.30: 4 residues within 4Å:- Chain G: V.195
- Chain H: S.271, N.272, T.278
Ligand excluded by PLIPNA.34: 4 residues within 4Å:- Chain I: L.294, S.295, Y.334
- Chain J: P.148
Ligand excluded by PLIPNA.35: 3 residues within 4Å:- Chain I: I.235, G.238, A.239
Ligand excluded by PLIPNA.36: 4 residues within 4Å:- Chain I: D.398, I.400
- Chain J: V.86, R.88
Ligand excluded by PLIPNA.38: 4 residues within 4Å:- Chain J: L.107, H.110, S.111
- Chain K: V.45
Ligand excluded by PLIPNA.42: 1 residues within 4Å:- Chain K: D.69
Ligand excluded by PLIPNA.44: 5 residues within 4Å:- Chain L: S.181, E.239, R.240, S.246, S.248
Ligand excluded by PLIPNA.45: 4 residues within 4Å:- Chain K: V.195
- Chain L: S.271, N.272, T.278
Ligand excluded by PLIP- 6 x B12: COBALAMIN(Non-covalent)
B12.7: 27 residues within 4Å:- Chain A: N.193, P.194, V.195, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain B: Y.144, R.152, L.180, R.217, V.218, K.219, G.238, E.239, R.240, Y.252, E.264, A.265, R.267, C.269, S.271, N.272
34 PLIP interactions:12 interactions with chain A, 21 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:F.258, A:F.329, A:F.329, B:L.180, B:Y.252, B:E.264, B:R.267
- Hydrogen bonds: A:P.194, A:V.195, A:S.247, A:E.257, A:S.295, A:S.295, B:V.218, B:K.219, B:E.239, B:R.240, B:Y.252, B:Y.252, B:N.272
- Water bridges: A:N.193, A:N.193, A:Y.334, B:R.152, B:R.152, B:R.217, B:R.217, B:R.217, B:K.219, B:S.250, B:C.269, B:C.269
- Salt bridges: B:R.217
- Metal complexes: B12.7
B12.13: 25 residues within 4Å:- Chain C: P.194, L.225, F.245, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain D: Y.144, R.152, L.180, R.217, V.218, G.238, E.239, R.240, Y.252, E.264, A.265, R.267, C.269, S.271
40 PLIP interactions:14 interactions with chain C, 25 interactions with chain D, 1 Ligand-Ligand interactions- Hydrophobic interactions: C:F.258, C:F.258, C:F.329, C:F.329, C:F.329, C:I.330, C:L.402, D:L.180, D:Y.252, D:E.264, D:R.267
- Hydrogen bonds: C:P.194, C:L.225, C:S.247, C:E.257, C:S.295, D:R.152, D:V.218, D:E.239, D:R.240, D:Y.252, D:Y.252, D:C.269
- Water bridges: C:N.193, C:E.257, D:R.152, D:R.152, D:R.217, D:R.217, D:R.240, D:R.240, D:S.250, D:C.269, D:C.269, D:S.271, D:S.271, D:S.271, D:S.271
- Salt bridges: D:R.217
- Metal complexes: B12.13
B12.22: 27 residues within 4Å:- Chain E: N.193, P.194, V.195, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain F: Y.144, R.152, L.180, R.217, V.218, K.219, G.238, E.239, R.240, Y.252, E.264, A.265, R.267, C.269, S.271, N.272
34 PLIP interactions:21 interactions with chain F, 12 interactions with chain E, 1 Ligand-Ligand interactions- Hydrophobic interactions: F:L.180, F:Y.252, F:E.264, F:R.267, E:F.258, E:F.329, E:F.329
- Hydrogen bonds: F:V.218, F:K.219, F:E.239, F:R.240, F:Y.252, F:Y.252, F:N.272, E:P.194, E:V.195, E:S.247, E:E.257, E:S.295, E:S.295
- Water bridges: F:R.152, F:R.152, F:R.217, F:R.217, F:R.217, F:K.219, F:S.250, F:C.269, F:C.269, E:N.193, E:N.193, E:Y.334
- Salt bridges: F:R.217
- Metal complexes: B12.22
B12.28: 25 residues within 4Å:- Chain G: P.194, L.225, F.245, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain H: Y.144, R.152, L.180, R.217, V.218, G.238, E.239, R.240, Y.252, E.264, A.265, R.267, C.269, S.271
40 PLIP interactions:25 interactions with chain H, 14 interactions with chain G, 1 Ligand-Ligand interactions- Hydrophobic interactions: H:L.180, H:Y.252, H:E.264, H:R.267, G:F.258, G:F.258, G:F.329, G:F.329, G:F.329, G:I.330, G:L.402
- Hydrogen bonds: H:R.152, H:V.218, H:E.239, H:R.240, H:Y.252, H:Y.252, H:C.269, G:P.194, G:L.225, G:S.247, G:E.257, G:S.295
- Water bridges: H:R.152, H:R.152, H:R.217, H:R.217, H:R.240, H:R.240, H:S.250, H:C.269, H:C.269, H:S.271, H:S.271, H:S.271, H:S.271, G:N.193, G:E.257
- Salt bridges: H:R.217
- Metal complexes: B12.28
B12.37: 27 residues within 4Å:- Chain I: N.193, P.194, V.195, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain J: Y.144, R.152, L.180, R.217, V.218, K.219, G.238, E.239, R.240, Y.252, E.264, A.265, R.267, C.269, S.271, N.272
34 PLIP interactions:21 interactions with chain J, 12 interactions with chain I, 1 Ligand-Ligand interactions- Hydrophobic interactions: J:L.180, J:Y.252, J:E.264, J:R.267, I:F.258, I:F.329, I:F.329
- Hydrogen bonds: J:V.218, J:K.219, J:E.239, J:R.240, J:Y.252, J:Y.252, J:N.272, I:P.194, I:V.195, I:S.247, I:E.257, I:S.295, I:S.295
- Water bridges: J:R.152, J:R.152, J:R.217, J:R.217, J:R.217, J:K.219, J:S.250, J:C.269, J:C.269, I:N.193, I:N.193, I:Y.334
- Salt bridges: J:R.217
- Metal complexes: B12.37
B12.43: 25 residues within 4Å:- Chain K: P.194, L.225, F.245, S.247, E.257, F.258, S.295, F.329, I.330, M.401, L.402
- Chain L: Y.144, R.152, L.180, R.217, V.218, G.238, E.239, R.240, Y.252, E.264, A.265, R.267, C.269, S.271
40 PLIP interactions:25 interactions with chain L, 14 interactions with chain K, 1 Ligand-Ligand interactions- Hydrophobic interactions: L:L.180, L:Y.252, L:E.264, L:R.267, K:F.258, K:F.258, K:F.329, K:F.329, K:F.329, K:I.330, K:L.402
- Hydrogen bonds: L:R.152, L:V.218, L:E.239, L:R.240, L:Y.252, L:Y.252, L:C.269, K:P.194, K:L.225, K:S.247, K:E.257, K:S.295
- Water bridges: L:R.152, L:R.152, L:R.217, L:R.217, L:R.240, L:R.240, L:S.250, L:C.269, L:C.269, L:S.271, L:S.271, L:S.271, L:S.271, K:N.193, K:E.257
- Salt bridges: L:R.217
- Metal complexes: B12.43
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shibata, N. et al., Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates. J.Biol.Chem. (2010)
- Release Date
- 2010-06-02
- Peptides
- Ethanolamine ammonia-lyase heavy chain: ACEGIK
Ethanolamine ammonia-lyase light chain: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
AG
CI
AK
CB
BD
DF
BH
DJ
BL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-6-6-mer
- Ligands
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 21 x NA: SODIUM ION(Non-functional Binders)
- 6 x B12: COBALAMIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shibata, N. et al., Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates. J.Biol.Chem. (2010)
- Release Date
- 2010-06-02
- Peptides
- Ethanolamine ammonia-lyase heavy chain: ACEGIK
Ethanolamine ammonia-lyase light chain: BDFHJL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
AG
CI
AK
CB
BD
DF
BH
DJ
BL
D