SMTL ID : 3af2.1

Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with AMPPCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.1: 16 residues within 4Å: Chain A: G.39, E.42, V.99, A.100, V.101, G.102, K.103, S.104, T.105, R.108, H.179, Y.235, R.238, F.239, M.242, F.254 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:A.100, A:V.101, A:G.102, A:G.102, A:K.103, A:S.104, A:T.105, A:T.105, A:T.105, A:R.108, A:R.108, A:Y.235, A:R.238, A:R.238 Water bridges: A:S.104, A:S.104, A:S.104, A:H.179 Salt bridges: A:K.103, A:R.238 ACP.13: 16 residues within 4Å: Chain B: G.39, E.42, V.99, A.100, V.101, G.102, K.103, S.104, T.105, R.108, H.179, Y.235, R.238, F.239, M.242, F.254 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:A.100, B:V.101, B:G.102, B:G.102, B:K.103, B:S.104, B:T.105, B:T.105, B:T.105, B:T.105, B:R.108, B:R.108, B:Y.235, B:Y.235, B:R.238, B:R.238 Water bridges: B:S.104, B:S.104, B:S.104, B:H.179 Salt bridges: B:K.103, B:R.238

22 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: R.15, Q.43, D.45, L.47, E.48, S.303 Ligand excluded by PLIP GOL.3: 1 residues within 4Å: Chain A: H.119 Ligand excluded by PLIP GOL.4: 5 residues within 4Å: Chain A: G.36, L.37, R.38, G.39, L.40 Ligand excluded by PLIP GOL.5: 3 residues within 4Å: Chain A: P.175, G.187, E.189 Ligand excluded by PLIP GOL.6: 7 residues within 4Å: Chain A: L.206, F.218, D.219, S.221, R.291, T.293, R.310 Ligand excluded by PLIP GOL.7: 5 residues within 4Å: Chain A: D.129, K.147, Y.177, H.179, Y.182 Ligand excluded by PLIP GOL.8: 6 residues within 4Å: Chain A: R.122, D.124, V.191, V.192, R.193 Ligands: GOL.11 Ligand excluded by PLIP GOL.9: 4 residues within 4Å: Chain A: Y.177, S.178, H.179, L.180 Ligand excluded by PLIP GOL.10: 7 residues within 4Å: Chain A: Q.207, T.208, P.287, T.288, R.291 Chain B: G.209, P.210 Ligand excluded by PLIP GOL.11: 6 residues within 4Å: Chain A: Q.111, P.121, R.122, V.123, D.124 Ligands: GOL.8 Ligand excluded by PLIP GOL.12: 2 residues within 4Å: Chain A: V.176, E.189 Ligand excluded by PLIP GOL.14: 6 residues within 4Å: Chain B: R.15, Q.43, D.45, L.47, E.48, S.303 Ligand excluded by PLIP GOL.15: 1 residues within 4Å: Chain B: H.119 Ligand excluded by PLIP GOL.16: 5 residues within 4Å: Chain B: G.36, L.37, R.38, G.39, L.40 Ligand excluded by PLIP GOL.17: 3 residues within 4Å: Chain B: P.175, G.187, E.189 Ligand excluded by PLIP GOL.18: 7 residues within 4Å: Chain B: L.206, F.218, D.219, S.221, R.291, T.293, R.310 Ligand excluded by PLIP GOL.19: 5 residues within 4Å: Chain B: D.129, K.147, Y.177, H.179, Y.182 Ligand excluded by PLIP GOL.20: 6 residues within 4Å: Chain B: R.122, D.124, V.191, V.192, R.193 Ligands: GOL.23 Ligand excluded by PLIP GOL.21: 4 residues within 4Å: Chain B: Y.177, S.178, H.179, L.180 Ligand excluded by PLIP GOL.22: 7 residues within 4Å: Chain A: G.209, P.210 Chain B: Q.207, T.208, P.287, T.288, R.291 Ligand excluded by PLIP GOL.23: 6 residues within 4Å: Chain B: Q.111, P.121, R.122, V.123, D.124 Ligands: GOL.20 Ligand excluded by PLIP GOL.24: 2 residues within 4Å: Chain B: V.176, E.189 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chetnani, B. et al., M. tuberculosis pantothenate kinase: dual substrate specificity and unusual changes in ligand locations. J.Mol.Biol. (2010)

Release Date

2010-05-26

Peptides

Pantothenate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pantothenate kinase

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