SMTL ID : 3af4.1

Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GMPPCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.1: 16 residues within 4Å: Chain A: G.39, E.42, V.99, A.100, V.101, G.102, K.103, S.104, T.105, R.108, H.179, R.238, M.242, A.246, F.247 Ligands: GOL.10 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:A.100, A:G.102, A:G.102, A:S.104, A:T.105, A:T.105, A:T.105, A:T.105, A:R.108, A:R.108, A:H.179, A:R.238 Water bridges: A:S.104, A:S.104 Salt bridges: A:K.103, A:R.238 GCP.15: 16 residues within 4Å: Chain B: G.39, E.42, V.99, A.100, V.101, G.102, K.103, S.104, T.105, R.108, H.179, R.238, M.242, A.246, F.247 Ligands: GOL.24 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:A.100, B:G.102, B:G.102, B:S.104, B:T.105, B:T.105, B:T.105, B:R.108, B:R.108, B:R.238 Water bridges: B:S.104, B:S.104 Salt bridges: B:K.103, B:R.238

26 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Y.177, S.178, H.179, L.180 Ligand excluded by PLIP GOL.3: 7 residues within 4Å: Chain A: F.218, D.219, F.220, S.221, R.291, T.293, R.310 Ligand excluded by PLIP GOL.4: 5 residues within 4Å: Chain A: A.157, R.160, F.161, S.164, C.173 Ligand excluded by PLIP GOL.5: 6 residues within 4Å: Chain A: R.15, Q.43, D.45, E.48, S.303, I.304 Ligand excluded by PLIP GOL.6: 3 residues within 4Å: Chain A: R.122, R.193, H.194 Ligand excluded by PLIP GOL.7: 3 residues within 4Å: Chain A: P.175, A.188, E.189 Ligand excluded by PLIP GOL.8: 4 residues within 4Å: Chain A: R.146, T.275, P.279, E.283 Ligand excluded by PLIP GOL.9: 5 residues within 4Å: Chain A: G.36, R.38, G.39, L.40, R.108 Ligand excluded by PLIP GOL.10: 4 residues within 4Å: Chain A: V.99, D.129, H.179 Ligands: GCP.1 Ligand excluded by PLIP GOL.11: 5 residues within 4Å: Chain A: R.146, F.149, E.151, E.283, N.284 Ligand excluded by PLIP GOL.12: 5 residues within 4Å: Chain A: R.122, D.124, V.191, V.192, R.193 Ligand excluded by PLIP GOL.13: 7 residues within 4Å: Chain A: D.225, A.226, R.227, R.289, R.297, K.298, R.306 Ligand excluded by PLIP GOL.14: 2 residues within 4Å: Chain A: E.189, Q.190 Ligand excluded by PLIP GOL.16: 4 residues within 4Å: Chain B: Y.177, S.178, H.179, L.180 Ligand excluded by PLIP GOL.17: 7 residues within 4Å: Chain B: F.218, D.219, F.220, S.221, R.291, T.293, R.310 Ligand excluded by PLIP GOL.18: 5 residues within 4Å: Chain B: A.157, R.160, F.161, S.164, C.173 Ligand excluded by PLIP GOL.19: 6 residues within 4Å: Chain B: R.15, Q.43, D.45, E.48, S.303, I.304 Ligand excluded by PLIP GOL.20: 3 residues within 4Å: Chain B: R.122, R.193, H.194 Ligand excluded by PLIP GOL.21: 3 residues within 4Å: Chain B: P.175, A.188, E.189 Ligand excluded by PLIP GOL.22: 4 residues within 4Å: Chain B: R.146, T.275, P.279, E.283 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain B: G.36, R.38, G.39, L.40, R.108 Ligand excluded by PLIP GOL.24: 4 residues within 4Å: Chain B: V.99, D.129, H.179 Ligands: GCP.15 Ligand excluded by PLIP GOL.25: 5 residues within 4Å: Chain B: R.146, F.149, E.151, E.283, N.284 Ligand excluded by PLIP GOL.26: 5 residues within 4Å: Chain B: R.122, D.124, V.191, V.192, R.193 Ligand excluded by PLIP GOL.27: 7 residues within 4Å: Chain B: D.225, A.226, R.227, R.289, R.297, K.298, R.306 Ligand excluded by PLIP GOL.28: 2 residues within 4Å: Chain B: E.189, Q.190 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chetnani, B. et al., M. tuberculosis pantothenate kinase: dual substrate specificity and unusual changes in ligand locations. J.Mol.Biol. (2010)

Release Date

2010-05-26

Peptides

Pantothenate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pantothenate kinase

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