- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MV2: (2S)-2,4-dihydroxy-N-(3-hydroxypropyl)-3,3-dimethylbutanamide(Non-covalent)
- 2 x FLC: CITRATE ANION(Non-covalent)
FLC.2: 12 residues within 4Å:- Chain A: G.39, E.42, V.99, A.100, V.101, G.102, K.103, S.104, T.105, R.108, R.238
- Ligands: NA.3
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:A.100, A:V.101, A:G.102, A:G.102, A:K.103, A:S.104, A:S.104, A:T.105, A:T.105
- Water bridges: A:L.40, A:R.108
- Salt bridges: A:K.103, A:K.103, A:R.108, A:R.238
FLC.17: 12 residues within 4Å:- Chain B: G.39, E.42, V.99, A.100, V.101, G.102, K.103, S.104, T.105, R.108, R.238
- Ligands: NA.18
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:A.100, B:V.101, B:G.102, B:G.102, B:K.103, B:S.104, B:S.104, B:T.105
- Water bridges: B:L.40, B:R.108
- Salt bridges: B:K.103, B:K.103, B:R.108, B:R.238
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 4 residues within 4Å:- Chain A: G.39, R.108
- Ligands: FLC.2, GOL.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.108
- Water bridges: A:R.108
NA.4: 4 residues within 4Å:- Chain A: A.157, R.160, F.161
- Ligands: GOL.6
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.160, A:F.161
- Water bridges: A:C.173
NA.18: 4 residues within 4Å:- Chain B: G.39, R.108
- Ligands: FLC.17, GOL.24
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.108
- Water bridges: B:R.108
NA.19: 4 residues within 4Å:- Chain B: A.157, R.160, F.161
- Ligands: GOL.21
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.157, B:R.160, B:F.161
- 22 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 10 residues within 4Å:- Chain A: L.206, S.215, F.218, D.219, F.220, S.221, R.291, T.293, R.310
- Ligands: GOL.13
Ligand excluded by PLIPGOL.6: 5 residues within 4Å:- Chain A: F.161, S.164, A.172, C.173
- Ligands: NA.4
Ligand excluded by PLIPGOL.7: 6 residues within 4Å:- Chain A: R.15, Q.43, D.45, E.48, S.303, I.304
Ligand excluded by PLIPGOL.8: 5 residues within 4Å:- Chain A: R.122, D.124, V.191, V.192, R.193
Ligand excluded by PLIPGOL.9: 5 residues within 4Å:- Chain A: G.36, R.38, G.39, R.108
- Ligands: NA.3
Ligand excluded by PLIPGOL.10: 4 residues within 4Å:- Chain A: Y.177, S.178, H.179, L.180
Ligand excluded by PLIPGOL.11: 2 residues within 4Å:- Chain A: P.175, A.188
Ligand excluded by PLIPGOL.12: 3 residues within 4Å:- Chain A: V.176, E.189, Q.190
Ligand excluded by PLIPGOL.13: 9 residues within 4Å:- Chain A: Q.63, R.67, T.293, R.310, K.311, L.312
- Chain B: L.70, T.74
- Ligands: GOL.5
Ligand excluded by PLIPGOL.14: 4 residues within 4Å:- Chain A: R.146, T.275, P.279, E.283
Ligand excluded by PLIPGOL.15: 5 residues within 4Å:- Chain A: Y.235, F.239, F.247, F.254
- Ligands: MV2.1
Ligand excluded by PLIPGOL.20: 10 residues within 4Å:- Chain B: L.206, S.215, F.218, D.219, F.220, S.221, R.291, T.293, R.310
- Ligands: GOL.28
Ligand excluded by PLIPGOL.21: 5 residues within 4Å:- Chain B: F.161, S.164, A.172, C.173
- Ligands: NA.19
Ligand excluded by PLIPGOL.22: 6 residues within 4Å:- Chain B: R.15, Q.43, D.45, E.48, S.303, I.304
Ligand excluded by PLIPGOL.23: 5 residues within 4Å:- Chain B: R.122, D.124, V.191, V.192, R.193
Ligand excluded by PLIPGOL.24: 5 residues within 4Å:- Chain B: G.36, R.38, G.39, R.108
- Ligands: NA.18
Ligand excluded by PLIPGOL.25: 4 residues within 4Å:- Chain B: Y.177, S.178, H.179, L.180
Ligand excluded by PLIPGOL.26: 2 residues within 4Å:- Chain B: P.175, A.188
Ligand excluded by PLIPGOL.27: 3 residues within 4Å:- Chain B: V.176, E.189, Q.190
Ligand excluded by PLIPGOL.28: 9 residues within 4Å:- Chain A: L.70, T.74
- Chain B: Q.63, R.67, T.293, R.310, K.311, L.312
- Ligands: GOL.20
Ligand excluded by PLIPGOL.29: 4 residues within 4Å:- Chain B: R.146, T.275, P.279, E.283
Ligand excluded by PLIPGOL.30: 5 residues within 4Å:- Chain B: Y.235, F.239, F.247, F.254
- Ligands: MV2.16
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chetnani, B. et al., Location and conformation of pantothenate and its derivatives in Mycobacterium tuberculosis pantothenate kinase: insights into enzyme action. Acta Crystallogr.,Sect.D (2011)
- Release Date
- 2011-08-17
- Peptides
- Pantothenate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MV2: (2S)-2,4-dihydroxy-N-(3-hydroxypropyl)-3,3-dimethylbutanamide(Non-covalent)
- 2 x FLC: CITRATE ANION(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 22 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chetnani, B. et al., Location and conformation of pantothenate and its derivatives in Mycobacterium tuberculosis pantothenate kinase: insights into enzyme action. Acta Crystallogr.,Sect.D (2011)
- Release Date
- 2011-08-17
- Peptides
- Pantothenate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A