- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.48 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FE: FE (III) ION(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 6 residues within 4Å:- Chain A: E.148, K.149, V.152
- Chain C: E.148, K.149, V.152
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:E.148, A:E.148, C:E.148
EDO.4: 4 residues within 4Å:- Chain B: P.21, Y.22, Y.175, N.185
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.185
- Water bridges: B:Q.174
EDO.5: 4 residues within 4Å:- Chain B: K.49, I.60, D.61, V.65
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.61
- Water bridges: B:K.49
EDO.6: 7 residues within 4Å:- Chain A: L.153
- Chain B: R.67, K.149, N.151, V.152
- Chain C: R.67
- Chain D: E.126
5 PLIP interactions:3 interactions with chain B, 1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: B:R.67, B:K.149, B:N.151, D:E.126
- Water bridges: C:R.67
EDO.7: 2 residues within 4Å:- Chain B: E.20, E.25
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.20
EDO.8: 6 residues within 4Å:- Chain B: A.64, R.67, D.68
- Chain C: A.64, R.67, D.68
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:R.67, B:D.68, C:R.67, C:D.68
- Water bridges: B:R.67, C:R.67
EDO.10: 6 residues within 4Å:- Chain C: L.142, R.143
- Chain D: F.4, L.47, I.50, E.51
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:L.142, C:R.143
EDO.12: 6 residues within 4Å:- Chain A: R.67
- Chain B: E.126
- Chain C: E.148, L.153
- Chain D: R.67, K.149
6 PLIP interactions:3 interactions with chain D, 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: D:R.67, D:K.149, B:E.126, C:E.148
- Water bridges: D:N.151, A:R.67
EDO.13: 4 residues within 4Å:- Chain B: N.177
- Chain D: K.34, H.35, T.38
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:H.35, B:N.177
EDO.14: 5 residues within 4Å:- Chain C: R.63
- Chain D: K.123, T.124, V.125, E.126
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:V.125, C:R.63
- Water bridges: D:G.127
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, T. et al., Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability. Febs J. (2011)
- Release Date
- 2011-02-02
- Peptides
- Superoxide dismutase [Mn/Fe]: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.48 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FE: FE (III) ION(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, T. et al., Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability. Febs J. (2011)
- Release Date
- 2011-02-02
- Peptides
- Superoxide dismutase [Mn/Fe]: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D