SMTL ID : 3atr.1

Geranylgeranyl Reductase (GGR) from Sulfolobus acidocaldarius co-crystallized with its ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)

FDA.1: 36 residues within 4Å: Chain A: I.12, G.13, G.14, G.15, F.16, A.17, D.36, S.37, K.38, K.46, P.47, C.48, G.49, D.50, A.51, T.121, T.122, A.123, A.157, T.158, G.159, S.163, A.186, Y.187, W.218, F.220, A.268, V.270, G.288, D.289, V.294, G.299, G.300, G.301, K.302 Ligands: DD9.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:A.186, A:A.268, A:V.270 Hydrogen bonds: A:G.15, A:A.17, A:S.37, A:K.46, A:G.49, A:A.51, A:A.51, A:A.123, A:A.123, A:S.161, A:S.163, A:D.289, A:G.301, A:K.302, A:K.302 Water bridges: A:F.16, A:F.16, A:G.18, A:S.37, A:G.44, A:D.289, A:S.290, A:G.303 pi-Cation interactions: A:K.302

1 x DD9: NONANE(Non-covalent)

DD9.2: 13 residues within 4Å: Chain A: A.51, V.52, S.53, I.74, G.92, E.93, G.94, L.203, Y.216, H.298, G.300 Ligands: FDA.1, PPV.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.51, A:I.74, A:L.203

1 x PPV: PYROPHOSPHATE(Non-covalent)

PPV.3: 9 residues within 4Å: Chain A: S.53, H.56, N.295, H.298, Y.341, K.344, S.381, E.382 Ligands: DD9.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.53, A:S.53, A:N.295, A:Y.341, A:Y.341, A:S.381 Water bridges: A:S.53 Salt bridges: A:H.56, A:H.56, A:H.298, A:H.298, A:K.344, A:K.344

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sasaki, D. et al., Structure and mutation analysis of archaeal geranylgeranyl reductase. J.Mol.Biol. (2011)

Release Date

2011-05-04

Peptides

Conserved Archaeal protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Conserved Archaeal protein

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