SMTL ID : 3ax8.1

Crystal structure of the human vitamin D receptor ligand binding domain complexed with 15alpha-methoxy-1alpha,25-dihydroxyvitamin D3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x EIM: (1R,3S,5Z)-5-[(2E)-2-[(1R,3S,3aS,7aR)-1-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-3-methoxy-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol(Non-covalent)

EIM.1: 21 residues within 4Å: Chain A: Y.30, L.63, L.69, V.70, S.73, I.107, M.108, R.110, S.111, S.114, W.122, C.124, V.136, H.141, L.145, L.149, Q.153, H.233, Y.237, L.240, V.254 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.30, A:L.63, A:L.69, A:L.69, A:W.122, A:V.136, A:V.136, A:L.145, A:Y.237, A:L.240, A:V.254 Hydrogen bonds: A:S.73, A:R.110, A:S.114, A:H.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shindo, K. et al., New C15-substituted active vitamin D3. Org.Lett. (2011)

Release Date

2011-10-05

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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