SMTL ID : 3bef.1 (1 other biounit)

Crystal structure of thrombin bound to the extracellular fragment of PAR1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ASN- ASP- LYS- TYR- GLU- PRO- PHE- TRP- GLU: Proteinase-activated receptor 1(Non-covalent)

ASN-ASP-LYS-TYR-GLU-PRO-PHE-TRP-GLU.1: 10 residues within 4Å: Chain A: S.41, Y.42, I.43, D.44 Chain B: D.122, E.124, T.125, G.133, Y.134, F.215 14 PLIP interactions: 3 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:Y.42, B:E.124, B:Y.134, B:Y.134, B:F.215, B:F.215 Hydrogen bonds: A:S.41, B:E.124, B:E.124, B:T.125, B:Y.134 Water bridges: A:D.44, B:N.216, B:Y.220

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain B: L.46, N.53 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gandhi, P.S. et al., Structural identification of the pathway of long-range communication in an allosteric enzyme. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2008-01-01

Peptides

Prothrombin: A
Prothrombin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Prothrombin

Prothrombin

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