SMTL ID : 3lu9.1 (1 other biounit)

Crystal structure of human thrombin mutant S195A in complex with the extracellular fragment of human PAR1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain B: P.48, N.53 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain B: R.233, K.236 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.236, B:K.236 Water bridges: B:G.235, B:G.238

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain B: I.167, V.168, R.170, C.173, F.186, C.187 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:V.168, B:R.170, B:R.170, B:C.187 Water bridges: B:A.132, B:H.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gandhi, P.S. et al., Crystal structure of thrombin bound to the uncleaved extracellular fragment of PAR1. J.Biol.Chem. (2010)

Release Date

2010-03-16

Peptides

Prothrombin: A
Prothrombin: B
Proteinase-activated receptor 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Prothrombin

Prothrombin

Proteinase-activated receptor 1

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