SMTL ID : 3bei.1

Crystal structure of the slow form of thrombin in a self_inhibited conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain B: L.46, P.48, N.53 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain B: L.130, A.132, I.167, V.168, E.169, R.170, F.186 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.132, B:R.170, B:R.170 Water bridges: B:H.242 GOL.3: 5 residues within 4Å: Chain B: A.126, A.127, L.130, H.242, F.244 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.242 Water bridges: B:R.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gandhi, P.S. et al., Structural identification of the pathway of long-range communication in an allosteric enzyme. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2007-12-25

Peptides

Prothrombin: A
Prothrombin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Prothrombin

Prothrombin

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