SMTL ID : 3bjy.1

Catalytic core of Rev1 in complex with DNA (modified template guanine) and incoming nucleotide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

DCP.1: 19 residues within 4Å: Chain A: R.20, L.24, D.58, F.59, D.60, C.61, F.62, F.63, A.97, S.98, Y.101, R.104, N.110, G.111, D.163, K.221 Chain C: C.12 Ligands: MG.2, MG.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:R.20, A:D.58, A:C.61, A:F.62, A:F.63, A:S.98, A:S.98, A:Y.101, A:N.110 Water bridges: A:R.104, A:R.104, A:R.214, A:K.221 Salt bridges: A:R.104, A:R.104, A:K.221

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: D.58, D.163, E.164 Chain C: C.12 Ligands: DCP.1, MG.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.58, A:D.163, A:E.164 MG.3: 5 residues within 4Å: Chain A: D.58, F.59, D.163 Ligands: DCP.1, MG.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.58, A:F.59, A:D.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nair, D.T. et al., Protein-template-directed synthesis across an acrolein-derived DNA adduct by yeast Rev1 DNA polymerase. Structure (2008)

Release Date

2008-10-28

Peptides

DNA repair protein REV1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA repair protein REV1

Related Entries With Identical Sequence