SMTL ID : 3bss.1

PglD from Campylobacter jejuni, NCTC 11168, with native substrate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

3 x UD4: UDP-2-acetamido-4-amino-2,4,6-trideoxy-alpha-D-glucopyranose(Non-covalent)

UD4.1: 16 residues within 4Å: Chain A: Y.13, S.16, G.17, H.18, D.38, D.39, F.40, K.41, I.58, G.59, I.63, H.137 Chain B: H.128, G.146, P.164, N.165 18 PLIP interactions: 14 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:I.63 Hydrogen bonds: A:A.15, A:S.16, A:S.16, A:H.18, A:D.39, A:D.39, A:G.59, B:H.128, B:N.165 Water bridges: A:G.17, A:G.17, A:G.19, A:N.60, A:N.121, B:G.146, B:G.146 pi-Stacking: A:F.40 UD4.2: 16 residues within 4Å: Chain B: Y.13, S.16, G.17, H.18, D.38, D.39, F.40, K.41, I.58, G.59, I.63, H.137 Chain C: H.128, G.146, P.164, N.165 19 PLIP interactions: 15 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: B:I.63 Hydrogen bonds: B:A.15, B:S.16, B:S.16, B:H.18, B:D.39, B:D.39, B:D.39, B:G.59, C:H.128, C:N.165 Water bridges: B:G.17, B:G.17, B:G.19, B:N.60, B:N.121, C:G.146, C:G.146 pi-Stacking: B:F.40 UD4.3: 16 residues within 4Å: Chain A: H.128, G.146, P.164, N.165 Chain C: Y.13, S.16, G.17, H.18, D.38, D.39, F.40, K.41, I.58, G.59, I.63, H.137 18 PLIP interactions: 14 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:I.63 Hydrogen bonds: C:A.15, C:S.16, C:S.16, C:H.18, C:D.39, C:D.39, C:G.59, A:H.128, A:N.165 Water bridges: C:G.17, C:G.17, C:G.19, C:N.60, C:N.121, A:G.146, A:G.146 pi-Stacking: C:F.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Olivier, N.B. et al., Crystal structure and catalytic mechanism of PglD from Campylobacter jejuni. J.Biol.Chem. (2008)

Release Date

2008-07-22

Peptides

Acetyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Acetyltransferase

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