SMTL ID : 5t2y.2 (1 other biounit)

Crystal Structure of C. jejuni PglD in complex with 5-methyl-4-(methylamino)-2-phenethylthieno[2,3-d]pyrimidine-6-carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-trimer

Ligands

3 x 753: 5-methyl-4-(methylamino)-2-(2-phenylethyl)thieno[2,3-d]pyrimidine-6-carboxylic acid(Non-covalent)

753.1: 11 residues within 4Å: Chain A: S.139, F.155, G.157, I.158, G.175, G.176, V.191 Chain B: L.163, P.164, V.181, P.194 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:P.164, B:V.181, B:P.194, B:P.194, A:F.155, A:V.191 Hydrogen bonds: A:S.139, A:I.158, A:G.176 753.4: 11 residues within 4Å: Chain B: S.139, F.155, G.157, I.158, G.175, G.176, V.191 Chain C: L.163, P.164, V.181, P.194 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:P.164, C:V.181, C:P.194, C:P.194, B:F.155, B:V.191 Hydrogen bonds: B:S.139, B:I.158, B:G.176 753.7: 11 residues within 4Å: Chain A: L.163, P.164, V.181, P.194 Chain C: S.139, F.155, G.157, I.158, G.175, G.176, V.191 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:F.155, C:V.191, A:P.164, A:V.181, A:P.194, A:P.194 Hydrogen bonds: C:S.139, C:I.158, C:G.176

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: M.198 No protein-ligand interaction detected (PLIP) GOL.5: 1 residues within 4Å: Chain B: M.198 No protein-ligand interaction detected (PLIP) GOL.8: 1 residues within 4Å: Chain C: M.198 No protein-ligand interaction detected (PLIP)

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 8 residues within 4Å: Chain A: L.87, S.89, P.90, V.107, I.108, N.109 Chain C: D.24, P.104 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:D.24 DMS.6: 8 residues within 4Å: Chain A: D.24, P.104 Chain B: L.87, S.89, P.90, V.107, I.108, N.109 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.24 DMS.9: 8 residues within 4Å: Chain B: D.24, P.104 Chain C: L.87, S.89, P.90, V.107, I.108, N.109 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:D.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Schutter, J.W. et al., Targeting Bacillosamine Biosynthesis in Bacterial Pathogens: Development of Inhibitors to a Bacterial Amino-Sugar Acetyltransferase from Campylobacter jejuni. J. Med. Chem. (2017)

Release Date

2017-02-22

Peptides

UDP-N-acetylbacillosamine N-acetyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

UDP-N-acetylbacillosamine N-acetyltransferase

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