SMTL ID : 3byw.1 (3 other biounits)

Crystal structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: H.84 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.84, H2O.2, H2O.14, H2O.15 ZN.2: 1 residues within 4Å: Chain A: E.126 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.126, H2O.4 ZN.4: 2 residues within 4Å: Chain B: D.36, H.159 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.36, B:D.36, B:H.159, H2O.13 ZN.5: 2 residues within 4Å: Chain B: A.67, H.84 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.84, B:H.84 ZN.6: 1 residues within 4Å: Chain B: E.86 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.86, H2O.17

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: D.36, H.159, E.161 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.159 ACT.7: 2 residues within 4Å: Chain B: D.90, E.95 No protein-ligand interaction detected (PLIP) ACT.8: 3 residues within 4Å: Chain B: D.50, Q.51 Ligands: ACT.9 No protein-ligand interaction detected (PLIP) ACT.9: 3 residues within 4Å: Chain B: Q.51, E.142 Ligands: ACT.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.51, B:Q.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae. To be Published

Release Date

2008-02-19

Peptides

Putative arabinofuranosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative arabinofuranosyltransferase

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