SMTL ID : 3byw.3 (3 other biounits)

Crystal structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.36, H.159 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.36, A:D.36, A:H.159, H2O.24 ZN.2: 1 residues within 4Å: Chain A: D.77 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.77, A:D.77, H2O.1, H2O.3 ZN.3: 3 residues within 4Å: Chain A: A.67, H.84, E.86 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.84, A:H.84, H2O.14 ZN.4: 2 residues within 4Å: Chain A: E.86, R.130 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.86, A:E.86 ZN.8: 2 residues within 4Å: Chain B: D.36, H.159 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.36, B:D.36, B:H.159 ZN.9: 1 residues within 4Å: Chain B: H.84 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.84, B:H.84, H2O.38

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 2 residues within 4Å: Chain A: E.95 Ligands: ACT.6 No protein-ligand interaction detected (PLIP) ACT.6: 4 residues within 4Å: Chain A: D.77, D.90, S.92 Ligands: ACT.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.77 ACT.7: 2 residues within 4Å: Chain A: K.49, D.50 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae. To be Published

Release Date

2008-02-19

Peptides

Putative arabinofuranosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Putative arabinofuranosyltransferase

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