SMTL ID : 3byw.2 (3 other biounits)

Crystal structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.36, H.159 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.36, A:D.36, A:H.159 ZN.2: 1 residues within 4Å: Chain A: D.64 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.64 ZN.4: 2 residues within 4Å: Chain B: D.36, H.159 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.36, B:D.36, B:H.159 ZN.5: 2 residues within 4Å: Chain B: H.84, E.86 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.84, B:H.84, H2O.22, H2O.24 ZN.6: 1 residues within 4Å: Chain B: E.129 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.129 ZN.7: 1 residues within 4Å: Chain B: D.76 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.76

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: E.95, S.123, T.124, E.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.126, A:E.126 ACT.8: 4 residues within 4Å: Chain B: D.45, K.46, L.47, E.144 No protein-ligand interaction detected (PLIP) ACT.9: 5 residues within 4Å: Chain B: D.90, L.91, S.123, T.124, E.126 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.90 ACT.10: 2 residues within 4Å: Chain B: D.52, R.73 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae. To be Published

Release Date

2008-02-19

Peptides

Putative arabinofuranosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Putative arabinofuranosyltransferase

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