SMTL ID : 3cd5.1

Thermodynamic and structure guided design of statin hmg-coa reductase inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: A.220, M.221, G.222, M.223, N.224 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.222, A:M.223, A:N.224 Water bridges: A:M.221, A:M.221, A:M.225 SO4.3: 6 residues within 4Å: Chain B: A.220, M.221, G.222, M.223, N.224, M.225 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:M.221, B:G.222, B:M.223, B:N.224, B:N.224, B:M.225 SO4.5: 5 residues within 4Å: Chain C: A.220, M.221, G.222, M.223, N.224 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:M.221, C:G.222, C:M.223, C:N.224 Water bridges: C:M.225, C:G.373 SO4.6: 6 residues within 4Å: Chain D: A.220, M.221, G.222, M.223, N.224, G.373 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:M.221, D:G.222, D:M.223, D:N.224, D:N.224 Water bridges: D:M.225, D:M.225

4 x 7HI: (3R,5R)-7-[3-(biphenyl-4-ylcarbamoyl)-2-ethyl-5,6,7,8-tetrahydrocyclohepta[b]pyrrol-1(4H)-yl]-3,5-dihydroxyheptanoic acid(Non-covalent)

7HI.2: 22 residues within 4Å: Chain A: E.125, C.127, A.130, S.131, R.134, K.301, A.317, H.318, N.321, S.418, L.419, A.422, L.423, H.427, K.430 Chain B: R.156, M.223, S.250, N.252, D.256, K.257, K.258 18 PLIP interactions: 8 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:A.130, A:L.419, A:A.422, A:L.423 Hydrogen bonds: A:E.125, A:S.131, A:N.321, B:R.156, B:R.156, B:S.250, B:D.256 Salt bridges: A:K.301, B:R.156, B:K.258 Water bridges: B:S.250, B:N.252, B:D.333, B:Q.336 7HI.4: 22 residues within 4Å: Chain A: R.156, M.223, S.250, N.252, D.256, K.257, K.258 Chain B: E.125, C.127, A.130, S.131, R.134, K.301, A.317, H.318, N.321, L.419, A.422, L.423, H.427, V.429, K.430 16 PLIP interactions: 9 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:A.130, B:H.318, B:L.419, B:A.422, B:L.423 Hydrogen bonds: B:E.125, B:S.131, B:N.321, A:R.156, A:R.156, A:S.250, A:D.256 Salt bridges: B:K.301, A:R.156, A:K.258 Water bridges: A:D.256 7HI.7: 23 residues within 4Å: Chain C: R.156, S.250, N.252, D.256, K.257, K.258 Chain D: E.125, C.127, L.128, A.130, S.131, R.134, K.301, A.317, H.318, N.321, S.418, L.419, A.422, L.423, H.427, V.429, K.430 16 PLIP interactions: 5 interactions with chain C, 11 interactions with chain D Hydrogen bonds: C:R.156, C:R.156, C:S.250, D:E.125, D:S.131, D:N.321 Salt bridges: C:R.156, C:K.258, D:K.301 Hydrophobic interactions: D:L.128, D:L.419, D:A.422, D:L.423, D:H.427, D:V.429 Water bridges: D:K.430 7HI.8: 19 residues within 4Å: Chain C: E.125, C.127, A.130, S.131, R.134, K.301, A.317, H.318, N.321, L.419, L.423, H.427, K.430 Chain D: R.156, S.250, N.252, D.256, K.257, K.258 15 PLIP interactions: 8 interactions with chain D, 7 interactions with chain C Hydrogen bonds: D:R.156, D:R.156, D:S.250, D:D.256, D:D.256, C:E.125, C:S.131, C:N.321 Water bridges: D:N.252 Salt bridges: D:R.156, D:K.258, C:K.301 Hydrophobic interactions: C:L.419, C:L.423, C:K.430

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarver, R.W. et al., Thermodynamic and structure guided design of statin based inhibitors of 3-hydroxy-3-methylglutaryl coenzyme a reductase. J.Med.Chem. (2008)

Release Date

2008-06-17

Peptides

3-hydroxy-3-methylglutaryl-coenzyme A reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-hydroxy-3-methylglutaryl-coenzyme A reductase

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