SMTL ID : 3ckj.1

Crystal Structure of a Mycobacterial Protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: V.113, P.114, R.116, R.320 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.116, A:R.320 PO4.6: 4 residues within 4Å: Chain B: V.113, P.114, R.116, R.320 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.116, B:R.320

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 12 residues within 4Å: Chain A: D.139, Y.170, G.189, R.190, V.191, T.192, L.214, G.215, G.216, R.261, H.263 Ligands: MRD.5 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.214 Hydrogen bonds: A:Y.170, A:G.189, A:V.191, A:T.192, A:T.192, A:L.214, A:G.216 Water bridges: A:R.190, A:R.261, A:H.263, A:H.263, A:H.263 Salt bridges: A:R.261, A:R.261, A:H.263, A:H.263 CIT.7: 12 residues within 4Å: Chain B: D.139, Y.170, G.189, R.190, V.191, T.192, L.214, G.215, G.216, R.261, H.263 Ligands: MRD.10 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.214 Hydrogen bonds: B:D.139, B:G.189, B:V.191, B:T.192, B:L.214, B:G.216 Water bridges: B:R.190, B:R.261, B:H.263 Salt bridges: B:R.261, B:R.261, B:H.263, B:H.263

6 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 9 residues within 4Å: Chain A: P.55, A.56, L.57, E.59, S.86, K.119, D.139, S.140, D.141 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.55, A:L.57, A:K.119 Hydrogen bonds: A:P.55, A:L.57, A:L.57, A:D.139, A:S.140 MRD.4: 10 residues within 4Å: Chain A: R.190, L.268, A.269, L.271, G.272, Q.297 Chain B: G.189, R.190, E.193, L.194 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.271, B:L.194 Hydrogen bonds: A:R.190, A:A.269, A:L.271, A:G.272, A:Q.297 MRD.5: 7 residues within 4Å: Chain A: Y.170, R.172, G.189, Q.212, R.261, H.263 Ligands: CIT.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.170 Hydrogen bonds: A:G.189, A:Q.212, A:Q.212 MRD.8: 9 residues within 4Å: Chain B: P.55, A.56, L.57, E.59, S.86, K.119, D.139, S.140, D.141 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:P.55, B:L.57, B:K.119 Hydrogen bonds: B:P.55, B:L.57, B:L.57, B:E.59, B:S.140 MRD.9: 10 residues within 4Å: Chain A: G.189, R.190, E.193, L.194 Chain B: R.190, L.268, A.269, L.271, G.272, Q.297 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:L.194, B:L.271 Hydrogen bonds: B:R.190, B:A.269, B:L.271, B:G.272, B:Q.297 MRD.10: 7 residues within 4Å: Chain B: Y.170, R.172, G.189, Q.212, R.261, H.263 Ligands: CIT.7 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.170 Hydrogen bonds: B:G.189, B:T.192, B:Q.212, B:Q.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fulton, Z. et al., Crystal structure of a UDP-glucose-specific glycosyltransferase from a Mycobacterium species. J.Biol.Chem. (2008)

Release Date

2008-07-29

Peptides

Putative uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative uncharacterized protein

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