SMTL ID : 3ckp.3 (2 other biounits)

Crystal structure of BACE-1 in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: F.18, E.20, M.21 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: E.96, E.123, S.124, D.125 Ligand excluded by PLIP

1 x 012: (4S)-N-[(1S,2R)-1-benzyl-3-{[3-(dimethylamino)benzyl]amino}-2-hydroxypropyl]-1-(3-methoxybenzyl)-2-oxoimidazolidine-4-carboxamide(Non-covalent)

012.3: 20 residues within 4Å: Chain A: G.30, Q.31, G.32, L.49, D.51, G.53, S.54, V.88, P.89, Y.90, T.91, F.127, I.129, I.145, Y.217, D.247, S.248, G.249, T.250, T.251 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.49, A:Y.90, A:Y.90, A:F.127, A:I.129 Hydrogen bonds: A:D.51, A:T.91, A:T.91, A:D.247, A:G.249, A:T.250, A:T.250, A:T.251, A:T.251 Water bridges: A:Y.33, A:N.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, H. et al., Synthesis, SAR, and X-ray structure of human BACE-1 inhibitors with cyclic urea derivatives. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-06-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-secretase 1

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