SMTL ID : 4fsl.2 (3 other biounits)

Crystal structure of beta-site app-cleaving enzyme 1 (BACE-DB-MUT) complex with N-(N-(4- acetamido-3-chloro-5-methylbenzyl)carbamimidoyl)-3-(4- methoxyphenyl)-5-methyl-4-isothiazolecarboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 0VB: N-{N-[4-(acetylamino)-3-chloro-5-methylbenzyl]carbamimidoyl}-3-(4-methoxyphenyl)-5-methyl-1,2-thiazole-4-carboxamide(Non-covalent)

0VB.1: 21 residues within 4Å: Chain A: L.49, D.51, G.53, S.54, Y.90, T.91, Q.92, G.93, K.126, F.127, I.129, W.134, Y.217, I.245, D.247, G.249, T.250, R.254, T.348, V.351 Ligands: IOD.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.129, A:I.129, A:W.134, A:Y.217, A:I.245, A:T.250 Hydrogen bonds: A:G.53, A:Q.92, A:F.127, A:T.348 Salt bridges: A:D.51, A:D.247 pi-Stacking: A:Y.90, A:F.127 pi-Cation interactions: A:R.254

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 4 residues within 4Å: Chain A: T.250, N.252, R.254 Ligands: 0VB.1 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: V.86, Y.87, P.148 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: K.94, E.123, S.124 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerritz, S.W. et al., Acyl Guanidine Inhibitors of beta-Secretase (BACE-1): Optimization of a Micromolar Hit to a Nanomolar Lead via Iterative Solid- and Solution-Phase Library Synthesis. J.Med.Chem. (2012)

Release Date

2012-10-10

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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