SMTL ID : 3cs4.1

Structure-based design of a superagonist ligand for the vitamin D nuclear receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x COV: (1S,3R,5Z,7E,14beta,17alpha)-17-[(2S,4S)-4-(2-hydroxy-2-methylpropyl)-2-methyltetrahydrofuran-2-yl]-9,10-secoandrosta-5,7,10-triene-1,3-diol(Non-covalent)

COV.1: 19 residues within 4Å: Chain A: Y.30, Y.34, L.63, L.66, L.69, V.70, S.73, I.107, R.110, S.111, S.114, W.122, C.124, Y.131, V.136, H.141, L.145, L.149, H.233 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.30, A:L.63, A:L.66, A:L.69, A:I.107, A:W.122, A:Y.131, A:V.136, A:L.145, A:L.149 Hydrogen bonds: A:Y.30, A:S.73, A:R.110, A:S.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hourai, S. et al., Structure-based design of a superagonist ligand for the vitamin d nuclear receptor. Chem.Biol. (2008)

Release Date

2008-05-27

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor

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